Co-expression analysis

Gene ID	Zm.13136.1.A1_at
Gene name	hypothetical protein LOC100191921
Homology with Arabidopsis	Similar to At4g32900: aminoacyl-tRNA hydrolase (HF=4e+0)
Module size	6 genes
NF	0.63
%ile	84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.94	Zm.13136.1.A1_at	CA404810	hypothetical protein LOC100191921	-	4e+0	At4g32900	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.90	ZmAffx.1405.1.S1_at	40794996-80	-	-	0	Atmg00510	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.91	ZmAffx.475.1.S1_at	AI677510	-	-	2e-1	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.94	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.94	Zm.13055.2.S1_at	CA403909	nuclear transcription factor Y subunit B-3	-	6e-19	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.94	Zm.17833.1.S1_at	CK394754	hypothetical protein LOC100277612	-	2e+0	At3g13740	URF 4-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.5	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the barley gene, Contig20846_at, orthologous to the query gene, Zm.13136.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	Contig20846_at	At4g32900	-	-	3e-6	At4g36860	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig6632_s_at	At4g32900	-	-	2e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig11836_at	At4g32900	-	-	6e-10	At1g22650	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig6633_at	At4g32900	-	-	4e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig6634_at	At4g32900	-	-	9e-4	At3g09470	-	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig2490_at	At4g32900	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig18444_at	At4g32900	-	-	2e+0	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig18440_at	At4g32900	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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