Co-expression analysis

Gene ID Zm.13095.1.A1_at
Gene name hypothetical protein LOC100217092
Homology with ArabidopsisSimilar to At2g04530: CPZ (HF=1e-7)
Module size 6 genes
NF 0.42
%ile 48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.13095.1.A1_atCA404407hypothetical protein LOC100217092-1e-7At2g04530CPZO.I.H.G.S.X.
0.6785.80.99ZmAffx.801.1.S1_atAI770364--3e+0At2g02990RNS1 (RIBONUCLEASE 1)O.I.H.G.S.X.
0.5065.70.99ZmAffx.801.1.A1_atAI770364--3e+0At2g02990RNS1 (RIBONUCLEASE 1)O.I.H.G.S.X.
0.3029.80.99ZmAffx.1400.1.S1_at40794996-75--3e+0At4g05631unknown proteinO.I.H.G.S.X.
0.2318.61.00ZmAffx.1370.1.S1_at11990232-98--5e+0At5g42955unknown proteinO.I.H.G.S.X.
0.1811.60.99ZmAffx.175.1.A1_atAI668276--3e+0At3g06820mov34 family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.99ZmAffx.923.1.S1_atAI795306--3e+0At1g54830NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)O.I.H.G.S.X.
0.5065.70.98Zm.7367.1.A1_atBM078099--5e+0At4g33730pathogenesis-related protein, putativeO.I.H.G.S.X.
0.5065.71.00Zm.9469.1.A1_atBM269128--2e+1At3g21610-O.I.H.G.S.X.
0.4251.30.99Zm.10700.1.S1_atCF019059hypothetical protein LOC100276306-5e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.4048.50.99Zm.5895.1.A1_atBM073861hypothetical protein LOC100193058-8e-7At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.3844.20.98Zm.17911.1.S1_atCK786706Brittle stalk-2-like protein 6-1e-3At3g02210COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)O.I.H.G.S.X.
0.3844.21.00ZmAffx.138.1.A1_atAI667759--3e+0At1g66510AAR2 protein familyO.I.H.G.S.X.
0.3641.30.99ZmAffx.896.1.A1_atAI770881--3e+0At5g57620MYB36 (myb domain protein 36)O.I.H.G.S.X.
0.3336.00.99ZmAffx.1373.1.S1_at40794996-161--2e-1At1g36340UBC31 (ubiquitin-conjugating enzyme 31)O.I.H.G.S.X.
0.3336.00.99ZmAffx.553.1.A1_atAI712209--3e+0At4g38850SAUR15 (SMALL AUXIN UPREGULATED 15)O.I.H.G.S.X.
0.3233.40.99ZmAffx.174.1.A1_atAI668269SAUR12 - auxin-responsive SAUR family member-3e+0At5g59060unknown proteinO.I.H.G.S.X.
0.3131.60.99ZmAffx.1465.1.S1_at11990232-32--9e-60Atcg00520-O.I.H.G.S.X.
0.2724.61.00ZmAffx.1376.1.S1_s_at40794996-51--0Atmg00080-O.I.H.G.S.X.
0.2724.60.99Zm.16252.1.A1_atCD526604hypothetical protein LOC100217300-1e-1At2g18490zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2724.60.99ZmAffx.1458.1.S1_at11990232-25--7e-94Atcg00420-O.I.H.G.S.X.
0.2622.70.98Zm.397.1.A1_atU50064.1type A-like cyclin-7e-11At1g44110CYCA1O.I.H.G.S.X.
0.2521.31.00ZmAffx.1372.1.S1_at40794996-160--7e-1At2g34355nodulin-relatedO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.998.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320473protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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