Co-expression analysis

Gene ID	Zm.13026.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g28930: unknown protein (HF=3e-1)
Module size	19 genes
NF	0.32
%ile	30.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.0	0.96	Zm.13026.1.S1_at	AY111398.1	-	-	3e-1	At4g28930	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.3418.1.A1_at	CF624427	-	-	2e+0	At4g33465	SCRL22 (SCR-Like 22)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.8945.1.S1_at	AY103889.1	-	-	2e-85	At5g18580	FASS (FASS 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.6681.1.A1_at	BG837073	wound induced protein	-	3e-1	At4g28240	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.890.2.A1_a_at	CA400673	GSDL-motif lipase	-	5e+0	At5g55710	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.5950.1.A1_at	BG837473	hypothetical protein LOC100216987	-	9e-3	At3g56480	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.5571.2.A1_a_at	AY107402.1	hypothetical protein LOC100194279	-	2e+0	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.9039.1.A1_at	BM078424	hypothetical protein LOC100193374	-	5e-1	At1g55310	SR33	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.7147.1.A1_at	AY105550.1	-	-	3e+0	At1g48750	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.17930.1.A1_at	CK347990	pollen-specific protein like	-	6e+0	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.6146.1.A1_at	CD989568	brassinosteroid biosynthesis-like protein	-	1e-40	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.6077.1.A1_at	CO532924	-	-	6e-19	At2g31810	acetolactate synthase small subunit, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.17145.1.S1_at	AY211982.1	transparent leaf area peptide	-	9e-1	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.263.1.A1_at	U10270.1	G-box binding factor 1	-	5e-3	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.5723.1.A1_at	BM079835	fiber protein Fb2	-	9e-3	At4g33740	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	Zm.223.1.A1_at	AB024292.1	histidine-containing phosphotransfer protein	-	2e+0	At4g32860	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.3022.1.A1_at	CF632756	hypothetical protein LOC100275367	-	1e-2	At5g42100	ATBG_PAP	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.4862.1.S1_at	CF629721	hypothetical protein LOC100273666	-	2e-27	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.7	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage