Co-expression analysis

Gene ID Zm.12997.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g46740: TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III) (HF=2e-21)
Module size 6 genes
NF 0.43
%ile 50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.98Zm.12997.1.S1_atCA402647--2e-21At3g46740TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)O.I.H.G.S.X.
0.6077.80.98Zm.19350.1.A1_atCO531475yip1 domain family member 6-2e-18At4g30260integral membrane Yip1 family proteinO.I.H.G.S.X.
0.4455.70.98Zm.10534.1.A1_x_atCO049306receptor protein kinase CLAVATA1-2e+0At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)O.I.H.G.S.X.
0.3233.40.98Zm.2016.1.S1_atAW566149zinc finger, C3HC4 type family protein-2e+0At5g51195unknown proteinO.I.H.G.S.X.
0.2928.10.98Zm.5180.1.A1_atAI612313--1e+1At5g27090AGL54O.I.H.G.S.X.
0.2724.60.98Zm.18133.1.A1_atAY103981.1--8e-38At1g78570RHM1 (RHAMNOSE BIOSYNTHESIS 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.97Zm.18258.1.A1_atCN845261hypothetical protein LOC100193725-3e-6At2g38610KH domain-containing proteinO.I.H.G.S.X.
0.6077.80.97Zm.7781.1.S1_atAY104909.1--5e-8At2g22125bindingO.I.H.G.S.X.
0.5775.10.97Zm.13527.1.S1_atAY108376.1--4e-1At2g20820unknown proteinO.I.H.G.S.X.
0.5369.10.94Zm.15997.1.S1_atCK368005hypothetical protein LOC100274725-2e-5At5g47570unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.13556.1.A1_atAY108151.1--9e-1At5g66490unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.3925.1.A1_atCF045284hypothetical protein LOC100273553-4e-8At1g31930XLG3 (extra-large GTP-binding protein 3)O.I.H.G.S.X.
0.5065.70.98Zm.2810.1.S1_atCK371548calcitonin peptide-receptor component protein-7e-1At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.4759.90.96Zm.1480.1.A1_atCA403094--1e+0At1g28330DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)O.I.H.G.S.X.
0.4455.70.95Zm.231.1.S1_atCK827218invertase2-3e-4At1g62660beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolarO.I.H.G.S.X.
0.4455.70.97Zm.9102.1.A1_atBM333481--2e-2At2g38110GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)O.I.H.G.S.X.
0.4455.70.97Zm.4383.1.S1_atBM078800hypothetical protein LOC100193621-4e-11At2g25950unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.7282.1.A1_atAB016810.1ferredoxin2-3e-2At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.4048.50.94Zm.12082.2.A1_x_atCF636676hypothetical protein LOC100278326-4e+0At4g21216unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.2144.1.A1_atCF626427--6e+0At4g10112unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.9280.1.A1_atBM336932--1e+0At5g61900BON1 (BONZAI 1)O.I.H.G.S.X.
0.4048.50.96Zm.8244.1.S1_atBM073405--2e+0At1g30972-O.I.H.G.S.X.
0.4048.50.97Zm.18430.1.S1_atCO524429hypothetical protein LOC100272360-3e-9At1g03030phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.3945.60.97Zm.5965.1.A1_atAI665966Hypothetical protein LOC100192560-2e+0At5g19140AILP1O.I.H.G.S.X.
0.3844.20.95Zm.13311.1.A1_atAI461509--5e+0At4g04190unknown proteinO.I.H.G.S.X.
0.3844.20.96Zm.12940.2.A1_atAI770813--8e-1At4g15050unknown proteinO.I.H.G.S.X.
0.3844.20.96ZmAffx.356.1.A1_atAI670543--3e-3At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.3844.20.97Zm.13853.1.S1_atAF272753.1kinesin heavy chain-1e-14At1g63640kinesin motor protein-relatedO.I.H.G.S.X.
0.3844.20.97ZmAffx.772.1.S1_atAI746167--3e+0At1g30840ATPUP4O.I.H.G.S.X.
0.3742.30.97Zm.13187.2.A1_atCF628617--1e+0At5g11860NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.3641.30.95Zm.16785.1.A1_atAF032468.1hypothetical protein LOC100272466-7e-37At5g59300UBC7 (UBIQUITIN CARRIER PROTEIN 7)O.I.H.G.S.X.
0.3641.30.97Zm.1622.1.S1_atAW787723--1e+1At4g03827unknown proteinO.I.H.G.S.X.
0.3641.30.97ZmAffx.362.1.S1_atAI670617--8e-1At1g56345pseudouridine synthase family proteinO.I.H.G.S.X.
0.3538.90.96Zm.17329.1.A1_atAI691463hypothetical protein LOC100280033-8e-1At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.3538.90.96Zm.871.1.A1_a_atBG316599--5e-4At3g06470GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.3538.90.97Zm.7541.1.A1_atBM341407hypothetical protein LOC100192095-6e+0At3g43110unknown proteinO.I.H.G.S.X.
0.3336.00.95Zm.3825.1.A1_atBM073848hypothetical protein LOC100276269 /// lipid binding protein-4e-1At5g02650unknown proteinO.I.H.G.S.X.
0.3336.00.96Zm.15494.1.A1_atAY107285.1hypothetical protein LOC100276709-5e-1At1g67360rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.3336.00.97Zm.218.1.A1_atAB016802.1MAP kinase 5-2e-50At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)O.I.H.G.S.X.
0.3336.00.97Zm.12165.1.A1_atBI595866ABC-type Co2+ transport system, permease component-4e-1At1g15900unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.2517.3.A1_x_atAF371272.1zein polypeptidesL2b-9e-1At5g62360invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3336.00.97Zm.1285.1.A1_atAY111542.1--1e+0At1g48745unknown proteinO.I.H.G.S.X.
0.3336.00.98Zm.17543.1.A1_atCK371034--6e+0At5g25240-O.I.H.G.S.X.
0.3233.40.97Zm.17249.1.A1_atAI977987--3e-30At3g26670-O.I.H.G.S.X.
0.3233.40.97Zm.7620.1.A1_atCF629426hypothetical protein LOC100279978-2e-3At2g24010scpl23 (serine carboxypeptidase-like 23)O.I.H.G.S.X.
0.3131.60.95Zm.12634.6.S1_x_atCD446319hypothetical protein LOC100193874-8e-55At3g04400emb2171 (embryo defective 2171)O.I.H.G.S.X.
0.3131.60.97Zm.17460.1.S1_atCK327598--3e+0At1g51970unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.8767.2.A1_a_atBM351177--6e+0At3g12510unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.5501.1.A1_atBM337994hypothetical protein LOC100194266-4e-2At1g55320AAE18 (ACYL-ACTIVATING ENZYME 18)O.I.H.G.S.X.
0.3131.60.97Zm.12101.1.A1_atAY106369.1hypothetical protein LOC100276199-8e-2At3g62770AtATG18aO.I.H.G.S.X.
0.3131.60.98Zm.5093.1.A1_atAI600800GAGA-binding protein-4e-4At1g14685BPC2 (BASIC PENTACYSTEINE 2)O.I.H.G.S.X.
0.3029.80.96ZmAffx.1181.1.A1_atAW927689esterase PIR7A-2e-1At5g56140KH domain-containing proteinO.I.H.G.S.X.
0.3029.80.96ZmAffx.953.1.A1_atAI833455hypothetical protein LOC100275413-1e+1At5g32440-O.I.H.G.S.X.
0.2928.10.95Zm.3706.1.S1_atCO526030hypothetical protein LOC100272244-2e-1At3g04080ATAPY1 (APYRASE 1)O.I.H.G.S.X.
0.2928.10.96Zm.2195.1.S1_atAY105504.1--4e+0At5g57565protein kinase family proteinO.I.H.G.S.X.
0.2928.10.96Zm.14307.1.S1_atBQ486034adenylate kinase-2e-1At2g39270adenylate kinase family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.398.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM202297Mo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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