Co-expression analysis

Gene ID	Zm.12997.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g46740: TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III) (HF=2e-21)
Module size	6 genes
NF	0.43
%ile	50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.19350.1.A1_at	CO531475	yip1 domain family member 6	-	2e-18	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8846.1.S1_at, orthologous to the query gene, Zm.12997.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	82.3	Ta.8846.1.S1_at	At3g46740	-	-	3e-15	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.2902.2.A1_x_at	At3g46740	-	-	5e+0	At1g68810	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.11617.1.S1_at	At3g46740	-	-	8e-1	At4g00090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.25332.1.S1_at	At3g46740	-	-	8e-30	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.12795.1.S1_at	At3g46740	-	-	1e+1	At4g16710	glycosyltransferase family protein 28	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.14416.2.A1_a_at	At3g46740	-	-	3e-4	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.4599.1.S1_at	At3g46740	-	-	4e-28	At5g56680	SYNC1	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.28018.1.S1_at	At3g46740	-	-	2e-27	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.16789.1.S1_at	At3g46740	-	-	2e-17	At4g27080	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.16303.1.S1_at	At3g46740	-	-	4e+0	At5g46090	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.1604.1.S1_at	At3g46740	-	-	6e-8	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.12123.1.S1_a_at	At3g46740	-	-	7e-32	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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