Co-expression analysis

Gene ID	Zm.12997.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g46740: TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III) (HF=2e-21)
Module size	6 genes
NF	0.43
%ile	50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.19350.1.A1_at	CO531475	yip1 domain family member 6	-	2e-18	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, Gma.10343.1.A1_at, orthologous to the query gene, Zm.12997.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	Gma.10343.1.A1_at	At3g46740	-	-	1e-6	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.3749.1.S1_at	At3g46740	-	-	4e-13	At4g24280	cpHsc70-1 (chloroplast heat shock protein 70-1)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.10732.1.S1_at	At3g46740	-	-	1e-55	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.1348.1.S1_at	At3g46740	-	-	8e-17	At4g33460	ATNAP13	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.1779.1.S1_at	At3g46740	glutamate 1-semialdehyde aminotransferase	-	6e-36	At5g63570	GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.3552.1.S1_at	At3g46740	-	-	3e+0	At3g13710	PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.6954.1.S1_a_at	At3g46740	-	-	5e-4	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.1352.1.S1_at	At3g46740	-	-	3e-37	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.51678.1.A1_at	At3g46740	-	-	4e+0	At4g12380	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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