Co-expression analysis

Gene ID Zm.12953.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g25570: unknown protein (HF=4e+0)
Module size 25 genes
NF 0.56
%ile 74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.80Zm.12953.1.A1_atCD444066--4e+0At5g25570unknown proteinO.I.H.G.S.X.
0.8094.00.92Zm.1546.2.S1_a_atCB411210hypothetical protein LOC100278775-3e-4At1g15270-O.I.H.G.S.X.
0.7892.50.91Zm.19031.1.A1_atBU051425--2e-5At2g01730ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II)O.I.H.G.S.X.
0.7792.10.92Zm.10226.1.A1_atBM332464--4e+0At2g13720ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)O.I.H.G.S.X.
0.7590.80.91Zm.19030.1.A1_atAW179359hypothetical protein LOC100279586-1e-1At1g63855unknown proteinO.I.H.G.S.X.
0.7389.90.88ZmAffx.47.1.A1_atAI664954hypothetical protein LOC100193281-8e-1At2g37030auxin-responsive family proteinO.I.H.G.S.X.
0.7087.00.92Zm.15590.1.A1_atCD448259hypothetical protein LOC100277246-1e+0At1g48730unknown proteinO.I.H.G.S.X.
0.6886.10.90Zm.13306.1.A1_atBQ048230DNA-damage-repair/toleration protein DRT102-6e-1At5g10625-O.I.H.G.S.X.
0.6886.10.92ZmAffx.459.1.A1_atAI677212--8e-1At1g2691060S ribosomal protein L10 (RPL10B)O.I.H.G.S.X.
0.6179.50.93Zm.2925.2.S1_atBG836389--4e-63At2g47110UBQ6O.I.H.G.S.X.
0.5875.10.86Zm.2974.1.A1_atAW120131--1e+0At1g28610GDSL-motif lipase, putativeO.I.H.G.S.X.
0.5875.10.94Zm.15680.1.A1_atCA405039hypothetical protein LOC100277476-7e+0At3g43153cAMP-dependent protein kinase inhibitor-relatedO.I.H.G.S.X.
0.5875.10.94ZmAffx.160.1.S1_atAI668152--8e-1At4g24380unknown proteinO.I.H.G.S.X.
0.5775.10.88ZmAffx.980.1.A1_atAI714647hypothetical protein LOC100277796-3e+0At4g28485unknown proteinO.I.H.G.S.X.
0.5369.10.88Zm.14951.4.S1_atBM380686S-adenosylmethionine decarboxylase proenzyme-7e-11At3g02470SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)O.I.H.G.S.X.
0.4961.90.93Zm.18467.1.S1_atAY107639.1--5e+0At5g35920CYP79A4PO.I.H.G.S.X.
0.4961.90.94Zm.12923.1.A1_atCF021555cytosolic purine 5-nucleotidase-3e-5At1g752105' nucleotidase family proteinO.I.H.G.S.X.
0.4658.40.88Zm.17752.1.A1_atCK371155--4e+0At5g13750ZIFL1 (ZINC INDUCED FACILITATOR-like 1)O.I.H.G.S.X.
0.4658.40.91Zm.3986.1.A1_atAY108648.1vacuolar ATPase subunit H protein-4e-9At3g42050vacuolar ATP synthase subunit H family proteinO.I.H.G.S.X.
0.4556.40.91Zm.15735.1.S1_atCD439760--2e+0At1g76590zinc-binding family proteinO.I.H.G.S.X.
0.4556.40.92Zm.13112.1.A1_atAY110231.1--3e-10At5g63420emb2746 (embryo defective 2746)O.I.H.G.S.X.
0.3742.30.87Zm.6822.2.A1_a_atCO518852--3e-2At5g42560abscisic acid-responsive HVA22 family proteinO.I.H.G.S.X.
0.3641.30.90Zm.1987.1.A1_a_atM33119.1superoxide dismutase3 /// Superoxide dismutase [Mn] 3.4, mitochondrial-1e-14At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.3641.30.90Zm.13102.1.A1_atCK985772--3e-3At2g34070unknown proteinO.I.H.G.S.X.
0.3233.40.90Zm.17603.1.S1_atCK371256--7e+0At5g44920Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.198.8GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320468protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320465protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320469protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320470protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320466protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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