Co-expression analysis

Gene ID Zm.12921.1.A1_at
Gene name hypothetical protein LOC100273635
Homology with ArabidopsisSimilar to At5g27290: unknown protein (HF=6e+0)
Module size 6 genes
NF 0.16
%ile 11.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.89Zm.12921.1.A1_atCA401711hypothetical protein LOC100273635-6e+0At5g27290unknown proteinO.I.H.G.S.X.
0.3641.30.95Zm.435.1.S1_atAF069910.1pyruvate dehydrogenase E1 beta subunit isoform 3-3e-28At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.2115.50.94Zm.3760.1.S1_atAW056221hypothetical protein LOC100216911-3e-12At1g31480SGR2 (SHOOT GRAVITROPISM 2)O.I.H.G.S.X.
0.1811.60.92Zm.17557.1.A1_atCK370056--1e+0At5g17080cathepsin-relatedO.I.H.G.S.X.
0.125.90.93Zm.17677.1.S1_atCK369609--4e-1At1g77220unknown proteinO.I.H.G.S.X.
0.041.50.94Zm.6273.1.A1_atAY108611.1patellin-5-2e-5At3g51670SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4455.70.94Zm.2469.1.A1_atAI714755novel plant SNARE 11-7e-7At3g17440NPSN13 (NOVEL PLANT SNARE 13)O.I.H.G.S.X.
0.3336.00.86Zm.11719.1.A1_atBM380180IAA26 - auxin-responsive Aux/IAA family member-2e-5At3g04730IAA16O.I.H.G.S.X.
0.2318.60.96Zm.16759.1.A1_atBM338376lactoylglutathione lyase-1e-11At1g08110lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.2216.90.95Zm.10224.2.S1_a_atCF243959hypothetical protein LOC100192800-1e-5At3g11397PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)O.I.H.G.S.X.
0.1912.80.95Zm.1180.1.S1_atBE512002PHD finger protein-1e-8At5g26210AL4 (ALFIN-LIKE 4)O.I.H.G.S.X.
0.1811.60.92Zm.13795.2.S1_atCF042915squalene synthase1-7e-20At4g34640SQS1 (SQUALENE SYNTHASE 1)O.I.H.G.S.X.
0.1710.60.89Zm.8377.1.A1_atCO527307hypothetical protein LOC100276229-1e+0At1g22010unknown proteinO.I.H.G.S.X.
0.1710.60.95Zm.5265.1.S1_atCD441734Hypothetical protein LOC100191432-4e-1At5g1520040S ribosomal protein S9 (RPS9B)O.I.H.G.S.X.
0.158.60.90Zm.12594.1.S1_atCA828902--4e+0At3g50260CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)O.I.H.G.S.X.
0.158.60.92Zm.17371.1.S1_atCK371658--7e+0At3g28140calmodulin-binding proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.898.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM206294Lower pulvinus 2 min total RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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