Co-expression analysis

Gene ID Zm.12888.1.A1_at
Gene name hypothetical protein LOC100191869
Homology with ArabidopsisSimilar to At3g52280: GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6) (HF=9e-2)
Module size 8 genes
NF 0.63
%ile 84.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4149.70.88Zm.12888.1.A1_atAY106765.1hypothetical protein LOC100191869-9e-2At3g52280GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6)O.I.H.G.S.X.
0.7792.10.95Zm.1546.2.S1_a_atCB411210hypothetical protein LOC100278775-3e-4At1g15270-O.I.H.G.S.X.
0.7792.10.96Zm.15590.1.A1_atCD448259hypothetical protein LOC100277246-1e+0At1g48730unknown proteinO.I.H.G.S.X.
0.6785.80.95Zm.19031.1.A1_atBU051425--2e-5At2g01730ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II)O.I.H.G.S.X.
0.6785.80.96Zm.10226.1.A1_atBM332464--4e+0At2g13720ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)O.I.H.G.S.X.
0.6179.50.94Zm.13306.1.A1_atBQ048230DNA-damage-repair/toleration protein DRT102-6e-1At5g10625-O.I.H.G.S.X.
0.5976.10.96Zm.19030.1.A1_atAW179359hypothetical protein LOC100279586-1e-1At1g63855unknown proteinO.I.H.G.S.X.
0.5267.30.95Zm.2925.2.S1_atBG836389--4e-63At2g47110UBQ6O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.699.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.299.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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