Co-expression analysis

Gene ID	Zm.12878.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g11560: catalytic (HF=9e-3)
Module size	6 genes
NF	0.38
%ile	42.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	59.9	0.98	Zm.12878.1.S1_at	CA400963	-	-	9e-3	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	ZmAffx.199.1.S1_at	AI668491	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	ZmAffx.963.1.A1_at	AI833792	-	-	8e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.99	Zm.19201.2.S1_a_at	CO526388	hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.8586.1.A1_at	BM338441	-	-	1e+0	At3g13227	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	ZmAffx.46.1.S1_at	AI664945	-	-	3e+0	At5g62260	DNA binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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