Co-expression analysis

Gene ID Zm.1284.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g50760: auxin-responsive family protein (HF=1e+1)
Module size 6 genes
NF 0.57
%ile 75.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.96Zm.1284.1.S1_atBE344880--1e+1At5g50760auxin-responsive family proteinO.I.H.G.S.X.
0.8395.60.96Zm.5767.1.A1_atAI714844hypothetical protein LOC100273619-8e-2At3g53850-O.I.H.G.S.X.
0.7389.90.96Zm.854.1.A1_atAW066950vesicle-associated membrane protein-associated protein A-1e-2At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.6077.80.96Zm.17115.1.S1_atCN844978--1e+0At5g67490unknown proteinO.I.H.G.S.X.
0.5369.10.96Zm.18486.1.A1_atAW461085hypothetical protein LOC100276684-1e-1At2g47760ALG3O.I.H.G.S.X.
0.2115.50.96Zm.549.1.A1_atAF244686.1glutathione S-transferase GST 21-2e+0At2g09840-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.94Zm.15936.2.S1_atCF040236Acidic ribosomal protein P1a-7e-2At3g4459060S acidic ribosomal protein P2 (RPP2D)O.I.H.G.S.X.
0.5065.70.95Zm.9384.1.A1_atBM349149--6e+0At4g28170unknown proteinO.I.H.G.S.X.
0.4861.30.92Zm.18326.1.A1_a_atCO523471protein TSSC1-3e-5At1g20540transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4759.90.96Zm.19062.1.S1_atCO531568glycine-rich RNA-binding protein 2-6e+0At5g51040unknown proteinO.I.H.G.S.X.
0.4352.80.95Zm.6995.1.A1_atBM336044prefoldin subunit 3-6e-10At5g49510PDF3 (PREFOLDIN 3)O.I.H.G.S.X.
0.4048.50.93Zm.13737.2.S1_atAI065573hypothetical protein LOC100272721-6e-54At4g08900arginaseO.I.H.G.S.X.
0.4048.50.95Zm.17270.1.S1_a_atAF371274.1zein-alpha precursor-5e-1At1g06070bZIP transcription factor, putative (bZIP69)O.I.H.G.S.X.
0.4048.50.96Zm.19356.1.A1_atCO533600--5e+0At3g27590unknown proteinO.I.H.G.S.X.
0.3844.20.93Zm.5952.1.A1_atAI665919--5e-5At5g57970methyladenine glycosylase family proteinO.I.H.G.S.X.
0.3844.20.94Zm.354.2.S1_atU37428.1glossy1-5e-2At4g19150ankyrin repeat family proteinO.I.H.G.S.X.
0.3641.30.92Zm.13035.1.A1_atCA403687NOL1R-6e+0At5g05530zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3538.90.93Zm.5339.1.A1_x_atAI619317cation cation antiporter-1e-5At1g54110cation exchanger, putative (CAX10)O.I.H.G.S.X.
0.3336.00.89Zm.1069.2.A1_atCF635559myristoyl-acyl carrier protein thioesterase-4e-8At1g08510FATB (fatty acyl-ACP thioesterases B)O.I.H.G.S.X.
0.3336.00.95Zm.4279.1.A1_atAI665645ATP binding protein-3e+0At4g39100SHL1 (short life)O.I.H.G.S.X.
0.3336.00.96Zm.17333.1.A1_atCK369962--3e+0At5g21280hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3233.40.93ZmAffx.199.1.A1_atAI668491--7e-1At1g14687AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)O.I.H.G.S.X.
0.3131.60.95Zm.16934.1.A1_atAY108912.1transcriptional regulatory protein algP-3e-1At4g03580-O.I.H.G.S.X.
0.3131.60.95Zm.17904.1.S1_atCK786896--3e-1At2g04790unknown proteinO.I.H.G.S.X.
0.3029.80.93Zm.5377.1.A1_atAY107303.1PCO142509 protein-5e-1At1g30757unknown proteinO.I.H.G.S.X.
0.2928.10.88Zm.18067.1.A1_atCK986128--1e+0At2g02370-O.I.H.G.S.X.
0.2928.10.94ZmAffx.1284.1.S1_at40794996-132--6e-1At4g36020CSDP1 (cold shock domain protein 1)O.I.H.G.S.X.
0.2928.10.94Zm.5328.1.S1_atCD441067hypothetical protein LOC100280151-4e-40At2g36490DML1 (DEMETER-LIKE 1)O.I.H.G.S.X.
0.2928.10.95Zm.10839.1.S1_atCF637878--4e+0At5g08290YLS8O.I.H.G.S.X.
0.2724.60.93Zm.5731.1.A1_atBM378722--7e-1At3g54560HTA11O.I.H.G.S.X.
0.2622.70.95Zm.15423.1.S1_atCD446448amidase-9e+0At5g55130CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)O.I.H.G.S.X.
0.2521.30.90Zm.5785.2.A1_atAY106694.1--3e+0At5g50930DNA bindingO.I.H.G.S.X.
0.2521.30.93Zm.6393.4.A1_atBQ048072H1 histone-4e+0At4g33710pathogenesis-related protein, putativeO.I.H.G.S.X.
0.2521.30.93Zm.8461.1.A1_atCF624626hypothetical protein LOC100192697-7e-10At3g05010transmembrane protein, putativeO.I.H.G.S.X.
0.2521.30.94Zm.4153.1.A1_atAY105302.1hydrophobic protein LTI6B-7e-2At3g05890RCI2B (RARE-COLD-INDUCIBLE 2B)O.I.H.G.S.X.
0.2521.30.94Zm.369.1.A1_atAF035460.1low molecular weight heat shock protein precursor-9e-3At4g25200ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)O.I.H.G.S.X.
0.2521.30.95Zm.5774.1.S1_atCK370317hypothetical protein LOC100280323-7e-5At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.2521.30.96Zm.6778.2.S1_atAI770701--8e-4At4g27230HTA2 (histone H2A)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.498.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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