Co-expression analysis

Gene ID	Zm.1284.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g50760: auxin-responsive family protein (HF=1e+1)
Module size	6 genes
NF	0.57
%ile	75.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.96	Zm.1284.1.S1_at	BE344880	-	-	1e+1	At5g50760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.96	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.854.1.A1_at	AW066950	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.18486.1.A1_at	AW461085	hypothetical protein LOC100276684	-	1e-1	At2g47760	ALG3	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.549.1.A1_at	AF244686.1	glutathione S-transferase GST 21	-	2e+0	At2g09840	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1613.1.S1_at, orthologous to the query gene, Zm.1284.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	Ta.1613.1.S1_at	At5g50760	-	-	3e+0	At2g04380	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.9494.1.S1_a_at	At5g50760	-	-	1e-8	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.56988.1.A1_at	At5g50760	-	-	6e-15	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.28182.1.A1_x_at	At5g50760	-	-	5e+0	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.27916.1.A1_x_at	At5g50760	-	-	7e+0	At5g13880	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.1799.1.S1_at	At5g50760	-	-	5e-1	At2g27290	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.19622.1.S1_at	At5g50760	-	-	1e-5	At1g66470	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.8896.2.S1_x_at	At5g50760	-	-	1e-1	At1g15970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.18606.1.S1_at	At5g50760	-	-	2e-2	At2g36910	ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.8896.1.S1_x_at	At5g50760	-	-	1e-1	At1g15970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.63920.1.A1_x_at	At5g50760	-	-	2e+0	At2g02880	mucin-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.132064.1.S1_at	At5g50760	-	-	2e+0	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.8896.2.S1_a_at	At5g50760	-	-	1e-1	At1g15970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.9328.1.S1_at	At5g50760	-	-	2e-7	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.8788.2.S1_at	At5g50760	-	-	4e-1	At2g43280	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.83694.1.S1_at	At5g50760	-	-	1e+1	At5g15970	KIN2	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.18965.2.S1_at	At5g50760	-	-	7e-2	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.86453.1.S1_s_at	At5g50760	-	-	1e-2	At5g54460	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.29794.1.A1_x_at	At5g50760	Xylanase inhibitor-like	-	2e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.14132.1.S1_x_at	At5g50760	-	-	5e-3	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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