Co-expression analysis

Gene ID Zm.12789.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g04510: LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) (HF=9e-3)
Module size 7 genes
NF 0.46
%ile 56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.97Zm.12789.1.A1_atCA398899--9e-3At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)O.I.H.G.S.X.
0.5571.60.97Zm.13397.1.A1_atCF006845Hypothetical protein LOC100193697-4e-14At2g35530bZIP transcription factor family proteinO.I.H.G.S.X.
0.5571.60.98Zm.9238.1.A1_atCO533275--5e-2At2g23320WRKY15O.I.H.G.S.X.
0.4048.50.97Zm.6438.1.A1_atBM268459hypothetical protein LOC100191671-1e-30At1g22170phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.4048.50.97Zm.9237.1.A1_atBM350875--4e-1At3g077503' exoribonuclease family domain 1-containing proteinO.I.H.G.S.X.
0.3336.00.98Zm.5166.1.S1_atAI612220--1e+0At2g19690PLA2-BETA (PHOSPHOLIPASE A2-BETA)O.I.H.G.S.X.
0.2828.10.97Zm.6475.2.A1_a_atCO531953hypothetical protein LOC100273857 /// PHD finger protein-3e-21At1g14510AL7 (ALFIN-LIKE 7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.298.6GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320442protocol: mRNA - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage