Co-expression analysis

Gene ID	Zm.12750.2.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g21410: VHA-A2 (VACUOLAR PROTON ATPASE A2) (HF=5e-38)
Module size	11 genes
NF	0.35
%ile	35.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.99	Zm.12750.2.A1_x_at	CD446742	-	-	5e-38	At2g21410	VHA-A2 (VACUOLAR PROTON ATPASE A2)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.10832.1.A1_at	BQ619413	-	-	5e+0	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.13588.1.A1_at	AY107800.1	-	-	1e+0	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.361.1.A1_at	AB060130.1	response regulator 8	-	5e-3	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.99	Zm.7016.1.A1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.13940.1.S1_at	AI677337	hypothetical protein LOC100193246	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.99	Zm.6275.1.S1_a_at	AF540907.1	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.3610.1.A1_at	AW065778	hypothetical protein LOC100276901	-	2e+0	At4g04360	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.8311.2.A1_a_at	BM073622	-	-	4e+0	At4g23090	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.99	Zm.1094.1.A1_at	BM339500	-	-	2e-5	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.9	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.6	95.2	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.9	93.8	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.7	93.2	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.1	90.8	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.1	90.8	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.0	90.2	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.0	90.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.8	88.9	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.8	88.9	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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