Co-expression analysis

Gene ID Zm.12746.1.A1_at
Gene name somatic embryogenesis related protein
Homology with ArabidopsisSimilar to At2g18530: protein kinase family protein (HF=1e+0)
Module size 6 genes
NF 0.49
%ile 61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.98Zm.12746.1.A1_atBU499218somatic embryogenesis related protein-1e+0At2g18530protein kinase family proteinO.I.H.G.S.X.
0.6785.80.99Zm.16824.1.S1_atCF602732SAM domain family protein-5e-1At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.6077.80.99ZmAffx.587.1.A1_atAI715015--3e+0At5g35900LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)O.I.H.G.S.X.
0.4048.50.99Zm.18109.1.S1_atAI881274--3e+0At4g23340oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.3641.30.99ZmAffx.743.1.S1_atAI745735--8e-1At4g28170unknown proteinO.I.H.G.S.X.
0.3233.40.99Zm.7309.1.S1_atAF384036.1nucleosome/chromatin assembly factor A-2e-3At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
4.095.8GSM202304B73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.695.2GSM202292B73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.595.1GSM202296B73xMo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.494.9GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.494.9GSM202306Mo17xB73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.394.7GSM202299Mo17xB73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616859_at, orthologous to the query gene, Zm.12746.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8895.41616859_atAt2g18530hypothetical protein LOC100245186-4e+0At5g67490unknown proteinO.I.H.G.S.X.
0.6384.31614667_atAt2g18530hypothetical protein LOC100243706-4e-6At2g44200unknown proteinO.I.H.G.S.X.
0.5980.61622033_atAt2g18530hypothetical protein LOC100251869-1e-25At3g11130clathrin heavy chain, putativeO.I.H.G.S.X.
0.5679.41619919_atAt2g18530--4e-1At5g48880PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)O.I.H.G.S.X.
0.5375.21612643_atAt2g18530hypothetical protein LOC100263481-1e-1At1g17460TRFL3 (TRF-LIKE 3)O.I.H.G.S.X.
0.5273.91617581_atAt2g18530--4e+0At4g07940unknown proteinO.I.H.G.S.X.
0.5173.21612947_atAt2g18530hypothetical protein LOC100258345-5e-45At3g19640magnesium transporter CorA-like family protein (MRS2-3)O.I.H.G.S.X.
0.4868.81616867_atAt2g18530hypothetical protein LOC100254223-2e-17At3g01090AKIN10 (Arabidopsis SNF1 kinase homolog 10)O.I.H.G.S.X.
0.4868.81622765_atAt2g18530--4e+0At3g59450calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4767.71613738_atAt2g18530hypothetical protein LOC100265879-6e-1At3g25420scpl21 (serine carboxypeptidase-like 21)O.I.H.G.S.X.
0.4767.71611837_atAt2g18530hypothetical protein LOC100244623-3e-1At5g61500ATG3O.I.H.G.S.X.
0.4464.11609777_atAt2g18530hypothetical protein LOC100257098-5e+0At5g44973-O.I.H.G.S.X.
0.4464.11618199_atAt2g18530hypothetical protein LOC100247128-7e-8At5g15790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4464.11620968_atAt2g18530hypothetical protein LOC100262977-5e+0Atmg00640-O.I.H.G.S.X.
0.4158.71617655_atAt2g18530hypothetical protein LOC100262391-5e-10At3g16620ATTOC120O.I.H.G.S.X.
0.4158.71609716_atAt2g18530hypothetical protein LOC100265922-3e-1At2g21210auxin-responsive protein, putativeO.I.H.G.S.X.
0.4057.71608270_atAt2g18530hypothetical protein LOC100267093-6e-13At3g08710ATH9 (thioredoxin H-type 9)O.I.H.G.S.X.
0.4057.71610676_atAt2g18530hypothetical protein LOC100267604-1e+0At4g13360catalyticO.I.H.G.S.X.
0.3954.91614966_atAt2g18530similar to pumilio domain-containing protein PPD1-1e-9At2g29190APUM2 (Arabidopsis Pumilio 2)O.I.H.G.S.X.
0.3853.61618380_atAt2g18530hypothetical protein LOC100252230-5e-7At5g64390HEN4 (HUA ENHANCER 4)O.I.H.G.S.X.
0.3751.71620599_atAt2g18530hypothetical protein LOC100246051 /// hypothetical protein LOC100256250-5e+0At5g2029040S ribosomal protein S8 (RPS8A)O.I.H.G.S.X.
0.3751.71614710_atAt2g18530--1e-1At1g53625unknown proteinO.I.H.G.S.X.
0.3751.71618841_s_atAt2g18530hypothetical protein LOC100259947-1e+0At4g36791unknown proteinO.I.H.G.S.X.
0.3446.81616539_s_atAt2g18530hypothetical protein LOC100255081-5e-4At4g01000ubiquitin family proteinO.I.H.G.S.X.
0.3345.71611442_s_atAt2g18530similar to ubiquitin-associated protein-4e-2At1g13635methyladenine glycosylase family proteinO.I.H.G.S.X.
0.3243.11619174_atAt2g18530hypothetical protein LOC100262285-1e-9At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.3243.11614671_atAt2g18530hypothetical protein LOC100241316-4e-8At3g51500unknown proteinO.I.H.G.S.X.
0.3243.11617406_s_atAt2g18530hypothetical protein LOC100266010-2e-8At3g07220transcriptional activator, putativeO.I.H.G.S.X.
0.3141.31613129_atAt2g18530hypothetical protein LOC100266068-2e-13At4g17330ATG2484-1O.I.H.G.S.X.
0.3141.31618562_atAt2g18530hypothetical protein LOC100258848-8e-3At4g02450glycine-rich proteinO.I.H.G.S.X.
0.2837.71608653_atAt2g18530hypothetical protein LOC100263217-5e+0At4g15020DNA binding / protein dimerizationO.I.H.G.S.X.
0.2632.01614365_atAt2g18530hypothetical protein LOC100266203-2e-36At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.2530.51606469_atAt2g18530hypothetical protein LOC100261321-3e-60At4g02720unknown proteinO.I.H.G.S.X.
0.2530.51615281_atAt2g18530hypothetical protein LOC100241659-2e-17At3g26560ATP-dependent RNA helicase, putativeO.I.H.G.S.X.
0.2022.41612922_atAt2g18530similar to FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription factor-1e+0At1g02510TPK4O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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