Co-expression analysis

Gene ID	Zm.12746.1.A1_at
Gene name	somatic embryogenesis related protein
Homology with Arabidopsis	Similar to At2g18530: protein kinase family protein (HF=1e+0)
Module size	6 genes
NF	0.49
%ile	61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.98	Zm.12746.1.A1_at	BU499218	somatic embryogenesis related protein	-	1e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	ZmAffx.587.1.A1_at	AI715015	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.18109.1.S1_at	AI881274	-	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	ZmAffx.743.1.S1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3	94.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the barley gene, Contig25532_at, orthologous to the query gene, Zm.12746.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	Contig25532_at	At2g18530	-	-	4e+0	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig16054_at	At2g18530	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig17419_at	At2g18530	-	-	2e-2	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig12587_at	At2g18530	-	-	4e-1	At5g64530	XND1	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig8908_at	At2g18530	-	-	3e-12	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig17823_at	At2g18530	-	-	2e+0	At5g52720	metal ion binding	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig10881_at	At2g18530	-	-	4e+0	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig1157_at	At2g18530	-	-	6e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig24303_at	At2g18530	-	-	3e-1	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig4360_at	At2g18530	-	-	2e-6	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig16226_at	At2g18530	-	-	7e-3	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig16321_at	At2g18530	-	-	1e-2	At1g54570	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig15745_at	At2g18530	-	-	1e-1	At1g35830	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig225_at	At2g18530	-	-	1e-4	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig12195_at	At2g18530	-	-	3e+0	At1g67910	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig24391_at	At2g18530	-	-	3e+0	At5g41430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig10961_at	At2g18530	-	-	2e-1	At1g78260	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig20549_at	At2g18530	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.25	28.9	rbah44m17_s_at	At2g18530	-	-	2e-1	At4g11120	translation elongation factor Ts (EF-Ts), putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig5303_at	At2g18530	-	-	5e+0	At4g12360	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig9517_at	At2g18530	-	-	2e-45	At5g40200	DegP9 (DegP protease 9)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig9507_at	At2g18530	-	-	6e-1	At2g43950	OEP37	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig10853_at	At2g18530	-	-	6e-1	At3g29036	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig8153_at	At2g18530	-	-	5e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig6454_at	At2g18530	-	-	6e-1	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig25611_at	At2g18530	-	-	2e-2	At1g68870	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig16079_at	At2g18530	-	-	1e-4	At2g37640	EXP3	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig5709_at	At2g18530	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig19826_at	At2g18530	-	-	2e+0	At1g16770	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig25477_at	At2g18530	-	-	6e+0	At5g33421	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig9974_at	At2g18530	-	-	2e-14	At1g26520	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig7966_at	At2g18530	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig17852_at	At2g18530	-	-	1e-1	At4g20420	tapetum-specific protein-related	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig8129_at	At2g18530	-	-	5e-1	At1g23145	RALFL2 (RALF-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig11793_at	At2g18530	-	-	9e-9	At5g07910	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig370_at	At2g18530	-	-	3e-23	At5g60390	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig23564_at	At2g18530	-	-	1e+0	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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