CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12746.1.A1_at

Gene name somatic embryogenesis related protein
Homology with Arabidopsis Similar to At2g18530: protein kinase family protein (HF=1e+0)

Module size 6 genes

NF 0.49

%ile 61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 0.98 Zm.12746.1.A1_at BU499218 somatic embryogenesis related protein - 1e+0 At2g18530 protein kinase family protein O.I. H.G. S.X.
0.67 85.8 0.99 Zm.16824.1.S1_at CF602732 SAM domain family protein - 5e-1 At3g07170 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.60 77.8 0.99 ZmAffx.587.1.A1_at AI715015 - - 3e+0 At5g35900 LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35) O.I. H.G. S.X.
0.40 48.5 0.99 Zm.18109.1.S1_at AI881274 - - 3e+0 At4g23340 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.36 41.3 0.99 ZmAffx.743.1.S1_at AI745735 - - 8e-1 At4g28170 unknown protein O.I. H.G. S.X.
0.32 33.4 0.99 Zm.7309.1.S1_at AF384036.1 nucleosome/chromatin assembly factor A - 2e-3 At1g18800 NRP2 (NAP1-RELATED PROTEIN 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	65.7	0.98	Zm.12746.1.A1_at	BU499218	somatic embryogenesis related protein	-	1e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.
0.67	85.8	0.99	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.60	77.8	0.99	ZmAffx.587.1.A1_at	AI715015	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.
0.40	48.5	0.99	Zm.18109.1.S1_at	AI881274	-	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.36	41.3	0.99	ZmAffx.743.1.S1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	0.99	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.2 98.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1 95.9 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0 95.8 GSM202304 B73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6 95.2 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5 95.1 GSM202296 B73xMo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4 94.9 GSM202302 B73xMo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4 94.9 GSM202306 Mo17xB73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3 94.7 GSM202299 Mo17xB73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3	94.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g18530, orthologous to the query gene, Zm.12746.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.75 86.9 At2g18530 816368 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MOPFBVA O.I. H.G. S.X.
0.67 81.6 At2g14010 815885 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.64 78.9 At1g34400 840342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.61 76.7 At5g34840 3771203 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.60 75.7 At4g03850 3770317 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 At3g30560 822770 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.57 73.8 At2g07702 815377 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.57 73.8 At3g42330 823226 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.56 73.0 At2g07768 3767772 heme transporter F:heme transporter activity;P:cytochrome complex assembly, heme transport;C:mitochondrion, membrane O.I. H.G. S.X.
0.54 69.5 At1g09220 837442 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cytosolic ribosome;POMF O.I. H.G. S.X.
0.53 68.6 At4g08420 3770258 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.51 66.3 At3g55650 824731 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA O.I. H.G. S.X.
0.51 66.3 At1g41770 840783 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 At2g06160 3767898 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 At3g32000 3769220 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 At4g08000 3769934 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.48 62.5 At5g35010 833446 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.48 62.5 At2g05470 3768434 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 At4g07360 3770409 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 At2g07705 815380 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.46 59.8 At3g43470 823432 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.46 59.8 At3g42970 823353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.44 57.2 At2g10880 3768614 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.44 57.2 At2g07701 815376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.43 55.3 At5g28200 3770776 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.43 55.3 At1g40150 3767174 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.42 53.9 At4g08130 826356 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.42 53.9 At2g07691 815367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.41 52.4 At2g11680 3767822 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.41 52.4 At2g07685 3768050 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.40 50.8 At2g07697 3768071 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.40 50.8 At2g22940 816825 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 At3g42900 3769508 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.37 45.0 At1g01150 839294 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription;C:unknown;PMO O.I. H.G. S.X.
0.37 45.0 At3g42160 823189 pectinesterase-related F:pectinesterase activity;P:cell wall modification;C:cell wall;P O.I. H.G. S.X.
0.36 43.6 At2g07730 3768192 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.36 43.6 At5g34970 833442 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.36 43.6 At1g37160 3767064 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.36 43.6 At2g10140 3767931 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 At2g11210 3768080 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 At5g33200 833275 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 At2g06230 815179 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 At1g35150 840402 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. H.G. S.X.
0.34 39.8 At1g33580 3766899 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.32 35.7 At1g44222 - - - O.I. H.G. S.X.
0.31 33.8 At1g35820 840484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.30 32.1 At3g32960 823060 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.29 30.3 At5g26890 832747 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.28 30.3 At2g05660 3768558 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.28 30.3 At1g42360 3767241 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.75	86.9	At2g18530	816368	protein kinase family protein	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MOPFBVA	O.I.	H.G.	S.X.
0.67	81.6	At2g14010	815885	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.64	78.9	At1g34400	840342	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.61	76.7	At5g34840	3771203	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.60	75.7	At4g03850	3770317	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	At3g30560	822770	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.57	73.8	At2g07702	815377	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.57	73.8	At3g42330	823226	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.56	73.0	At2g07768	3767772	heme transporter	F:heme transporter activity;P:cytochrome complex assembly, heme transport;C:mitochondrion, membrane	O.I.	H.G.	S.X.
0.54	69.5	At1g09220	837442	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cytosolic ribosome;POMF	O.I.	H.G.	S.X.
0.53	68.6	At4g08420	3770258	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.51	66.3	At3g55650	824731	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA	O.I.	H.G.	S.X.
0.51	66.3	At1g41770	840783	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	At2g06160	3767898	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	At3g32000	3769220	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	At4g08000	3769934	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.48	62.5	At5g35010	833446	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.48	62.5	At2g05470	3768434	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	At4g07360	3770409	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	At2g07705	815380	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.46	59.8	At3g43470	823432	nucleic acid binding / zinc ion binding	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.46	59.8	At3g42970	823353	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	At2g10880	3768614	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.44	57.2	At2g07701	815376	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.43	55.3	At5g28200	3770776	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.43	55.3	At1g40150	3767174	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	At4g08130	826356	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	At2g07691	815367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.41	52.4	At2g11680	3767822	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.41	52.4	At2g07685	3768050	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.40	50.8	At2g07697	3768071	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.40	50.8	At2g22940	816825	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.40	50.8	At3g42900	3769508	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.37	45.0	At1g01150	839294	DNA binding / protein binding / zinc ion binding	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription;C:unknown;PMO	O.I.	H.G.	S.X.
0.37	45.0	At3g42160	823189	pectinesterase-related	F:pectinesterase activity;P:cell wall modification;C:cell wall;P	O.I.	H.G.	S.X.
0.36	43.6	At2g07730	3768192	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.36	43.6	At5g34970	833442	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.36	43.6	At1g37160	3767064	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.36	43.6	At2g10140	3767931	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.35	41.6	At2g11210	3768080	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.35	41.6	At5g33200	833275	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.35	41.6	At2g06230	815179	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	At1g35150	840402	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	H.G.	S.X.
0.34	39.8	At1g33580	3766899	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.32	35.7	At1g44222	-	-	-	O.I.	H.G.	S.X.
0.31	33.8	At1g35820	840484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.30	32.1	At3g32960	823060	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.29	30.3	At5g26890	832747	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.28	30.3	At2g05660	3768558	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.28	30.3	At1g42360	3767241	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.12746.1.A1_at
Gene name	somatic embryogenesis related protein
Homology with Arabidopsis	Similar to At2g18530: protein kinase family protein (HF=1e+0)
Module size	6 genes
NF	0.49
%ile	61.4

Co-expression analysis

Gene ID Zm.12746.1.A1_at Gene name somatic embryogenesis related protein Homology with ArabidopsisSimilar to At2g18530: protein kinase family protein (HF=1e+0) Module size 6 genes NF 0.49 %ile 61.4

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.12746.1.A1_at

Gene name somatic embryogenesis related protein
Homology with Arabidopsis Similar to At2g18530: protein kinase family protein (HF=1e+0)

Module size 6 genes

NF 0.49

%ile 61.4

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera