Co-expression analysis

Gene ID	Zm.1269.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g53980: ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) (HF=5e+0)
Module size	6 genes
NF	0.52
%ile	68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.99	Zm.1269.1.A1_at	BM350862	-	-	5e+0	At5g53980	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.99	Zm.12691.1.A1_at	BU645208	zinc finger C-x8-C-x5-C-x3-H type family protein	-	2e+0	At4g16990	RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.99	Zm.12690.1.S1_at	CA831966	hypothetical protein LOC100191357	-	5e-23	At4g12790	ATP-binding family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	Zm.12225.1.A1_at	CA403034	DIP1	-	2e+0	At3g14340	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.7127.1.A1_at	BM266653	nonspecific lipid-transfer protein	-	8e+0	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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