Co-expression analysis

Gene ID	Zm.12687.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g59010: protein kinase-related (HF=9e-1)
Module size	7 genes
NF	0.41
%ile	47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.12687.2.S1_x_at	BQ294256	-	-	9e-1	At5g59010	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	ZmAffx.753.1.S1_at	AI745901	-	-	8e-1	At3g29633	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.4869.1.S1_at	CF637217	hypothetical protein LOC100193077	-	4e-21	At3g07050	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.4995.1.A1_at	CA401993	ETHYLENE-INSENSITIVE3-like 1 protein	-	1e-2	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.1671.1.A1_at	BM072844	hypothetical protein LOC100191216	-	1e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.3930.1.S1_s_at	BQ538158	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.6828.1.A1_at	AI396546	-	-	2e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
13.2	98.8	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.6	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.7	98.1	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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