Co-expression analysis

Gene ID Zm.12656.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g07020: proline-rich family protein (HF=5e+0)
Module size 6 genes
NF 0.72
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.12656.1.S1_atCF010887--5e+0At5g07020proline-rich family proteinO.I.H.G.S.X.
0.7188.20.98Zm.6941.1.A1_atCF638044--4e-1At3g46770transcriptional factor B3 family proteinO.I.H.G.S.X.
0.6785.80.98Zm.18115.1.A1_atCN845273ring domain containing protein-5e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6077.80.98Zm.7569.1.A1_atBM347275--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.5571.60.98Zm.4278.1.A1_atAI834022hypothetical protein LOC100279402-1e+1At5g05550transcription factorO.I.H.G.S.X.
0.5065.70.98Zm.7728.1.A1_atBM079644--3e-3At2g33700protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.999.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.199.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.598.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.200648.1.S1_at, orthologous to the query gene, Zm.12656.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.2PtpAffx.200648.1.S1_atAt5g07020hypothetical protein-2e-5At5g66320zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.5380.5PtpAffx.205690.1.S1_atAt5g07020hypothetical protein-2e-47At3g63200PLP9 (PATATIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.4673.7PtpAffx.147539.1.A1_atAt5g07020--6e-13At1g76310CYCB2O.I.H.G.S.X.
0.4268.6PtpAffx.56617.1.A1_atAt5g07020--1e-19At4g30190AHA2O.I.H.G.S.X.
0.3964.6PtpAffx.121004.1.A1_atAt5g07020hypothetical protein-6e-3At2g47140short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3964.6PtpAffx.22736.1.S1_atAt5g07020hypothetical protein-1e-8At4g09060unknown proteinO.I.H.G.S.X.
0.3762.3PtpAffx.201947.1.S1_atAt5g07020hypothetical protein-2e-11At1g22490basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3661.6PtpAffx.209248.1.S1_atAt5g07020hypothetical protein-1e-22At3g56100MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE)O.I.H.G.S.X.
0.3661.6PtpAffx.207397.1.S1_atAt5g07020hypothetical protein-3e-1At3g62080SNF7 family proteinO.I.H.G.S.X.
0.3661.6PtpAffx.148889.1.S1_s_atAt5g07020hypothetical protein-1e+0At3g09150HY2 (ELONGATED HYPOCOTYL 2)O.I.H.G.S.X.
0.3255.2PtpAffx.95368.1.A1_s_atAt5g07020hypothetical protein-1e+0At1g80370CYCA2O.I.H.G.S.X.
0.3255.2PtpAffx.40138.1.A1_atAt5g07020hypothetical protein-3e+0At4g04953unknown proteinO.I.H.G.S.X.
0.3153.7PtpAffx.213894.1.S1_atAt5g07020hypothetical protein-4e-39At5g40030protein kinase, putativeO.I.H.G.S.X.
0.2950.5PtpAffx.2045.1.S1_atAt5g07020hypothetical protein-5e-20At1g08560SYP111 (SYNTAXIN OF PLANTS 111)O.I.H.G.S.X.
0.2950.5PtpAffx.207397.1.S1_x_atAt5g07020hypothetical protein-3e-1At3g62080SNF7 family proteinO.I.H.G.S.X.
0.2850.5PtpAffx.129586.1.S1_atAt5g07020hypothetical protein-6e-11At4g35620CYCB2O.I.H.G.S.X.
0.2850.5PtpAffx.128848.1.S1_atAt5g07020--3e-5At3g63200PLP9 (PATATIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.2747.1PtpAffx.206208.1.S1_atAt5g07020hypothetical protein-1e-16At2g07170bindingO.I.H.G.S.X.
0.2543.6PtpAffx.156942.1.S1_atAt5g07020--1e-38At4g22010sks4 (SKU5 Similar 4)O.I.H.G.S.X.
0.2543.6PtpAffx.50725.1.A1_atAt5g07020hypothetical protein-2e+0At3g21590-O.I.H.G.S.X.
0.2340.5PtpAffx.123129.1.A1_s_atAt5g07020--3e-2At4g38660thaumatin, putativeO.I.H.G.S.X.
0.2340.5PtpAffx.205037.1.S1_atAt5g07020hypothetical protein-7e-7At3g52450PUB22 (PLANT U-BOX 22)O.I.H.G.S.X.
0.2238.3PtpAffx.206294.1.S1_atAt5g07020cytochrome P450-1e-2At3g48300CYP71A23O.I.H.G.S.X.
0.2238.3PtpAffx.106267.1.A1_atAt5g07020hypothetical protein-6e-1At5g01570unknown proteinO.I.H.G.S.X.
0.2238.3Ptp.7126.1.S1_atAt5g07020hypothetical protein-5e-1At4g03140binding / catalytic/ oxidoreductaseO.I.H.G.S.X.
0.2136.5PtpAffx.205518.1.S1_atAt5g07020hypothetical protein-4e-4At1g75710zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2136.5Ptp.2706.1.S1_atAt5g07020--3e-5At4g25240SKS1 (SKU5 SIMILAR 1)O.I.H.G.S.X.
0.1423.5PtpAffx.2265.10.A1_a_atAt5g07020hypothetical protein-2e-4At1g20693HMGB2 (HIGH MOBILITY GROUP B 2)O.I.H.G.S.X.
0.1219.6PtpAffx.2791.2.S1_atAt5g07020hypothetical protein-7e-90At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.1118.1PtpAffx.122394.1.S1_s_atAt5g07020hypothetical protein-2e-15At5g64570XYL4O.I.H.G.S.X.
0.0914.6PtpAffx.249.101.A1_s_atAt5g07020hypothetical protein-7e-65At1g13950ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)O.I.H.G.S.X.
0.0711.6Ptp.4316.1.S1_a_atAt5g07020hypothetical protein-5e-47At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)O.I.H.G.S.X.
0.046.9PtpAffx.57990.1.A1_s_atAt5g07020hypothetical protein-8e-27At3g56370leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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