CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12656.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g07020: proline-rich family protein (HF=5e+0)

Module size 6 genes

NF 0.72

%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.12656.1.S1_at CF010887 - - 5e+0 At5g07020 proline-rich family protein O.I. H.G. S.X.
0.71 88.2 0.98 Zm.6941.1.A1_at CF638044 - - 4e-1 At3g46770 transcriptional factor B3 family protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.18115.1.A1_at CN845273 ring domain containing protein - 5e-1 At2g23780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.60 77.8 0.98 Zm.7569.1.A1_at BM347275 - - 1e+0 At1g69880 ATH8 (thioredoxin H-type 8) O.I. H.G. S.X.
0.55 71.6 0.98 Zm.4278.1.A1_at AI834022 hypothetical protein LOC100279402 - 1e+1 At5g05550 transcription factor O.I. H.G. S.X.
0.50 65.7 0.98 Zm.7728.1.A1_at BM079644 - - 3e-3 At2g33700 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.9 99.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6 98.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5 98.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3 98.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g07020, orthologous to the query gene, Zm.12656.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.46 59.8 At5g07020 830593 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO O.I. H.G. S.X.
0.50 65.3 At1g19150 838498 LHCA6 PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, O.I. H.G. S.X.
0.50 65.3 At1g74730 843812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. H.G. S.X.
0.50 65.3 At5g08050 830699 - F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO O.I. H.G. S.X.
0.40 50.8 At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P O.I. H.G. S.X.
0.35 41.6 At3g04790 819639 ribose 5-phosphate isomerase-related F:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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