Co-expression analysis

Gene ID	Zm.12634.3.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g16830: nuclear RNA-binding protein (RGGA) (HF=4e+0)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.96	Zm.12634.3.A1_a_at	AI891366	-	-	4e+0	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.1322.1.A1_at	AI737263	hypothetical protein LOC100279212	-	5e-31	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.4977.1.S1_at	AY109232.1	-	-	2e-1	At1g58360	AAP1 (AMINO ACID PERMEASE 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97			-	-				O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2758.1.A1_at	AW067110	-	-	2e-6	At2g25730	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.2	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig6217_at, orthologous to the query gene, Zm.12634.3.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig6217_at	At4g16830	-	-	5e-86	At5g19820	emb2734 (embryo defective 2734)	O.I.	H.G.	S.X.	Please select
0.81	92.8	rbags18e07_s_at	At4g16830	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.	Please select
0.76	89.8	EBem09_SQ001_B21_s_at	At4g16830	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig2584_at	At4g16830	-	-	1e-6	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig19387_at	At4g16830	-	-	2e-1	At3g30580	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig11081_at	At4g16830	-	-	1e-26	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig7221_s_at	At4g16830	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig19492_at	At4g16830	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.53	69.7	HA12A08u_s_at	At4g16830	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig18703_at	At4g16830	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig1913_s_at	At4g16830	-	-	2e-46	At3g09200	60S acidic ribosomal protein P0 (RPP0B)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig10380_x_at	At4g16830	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig20936_at	At4g16830	-	-	3e-5	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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