Co-expression analysis

Gene ID Zm.12634.3.A1_a_at
Gene name
Homology with ArabidopsisSimilar to At4g16830: nuclear RNA-binding protein (RGGA) (HF=4e+0)
Module size 6 genes
NF 0.59
%ile 78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.96Zm.12634.3.A1_a_atAI891366--4e+0At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.6785.80.97Zm.1322.1.A1_atAI737263hypothetical protein LOC100279212-5e-31At3g02760ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.5571.60.97Zm.4977.1.S1_atAY109232.1--2e-1At1g58360AAP1 (AMINO ACID PERMEASE 1)O.I.H.G.S.X.
0.5369.10.97--O.I.H.G.S.X.
0.5065.70.98Zm.2758.1.A1_atAW067110--2e-6At2g25730unknown proteinO.I.H.G.S.X.
0.4861.30.97Zm.16861.2.S1_atAW498347L-ascorbate oxidase-7e-4At1g55570sks12 (SKU5 Similar 12)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.2GSM253279ZM_8d_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.597.1GSM253278ZM_8d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.596.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM253277ZM_8d_SG200_3inf_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.895.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g16830, orthologous to the query gene, Zm.12634.3.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2522.6At4g16830827389nuclear RNA-binding protein (RGGA)F:RNA binding;P:biological_process unknown;C:nucleus, cytoplasm;MBPOFVAO.I.H.G.S.X.
0.4050.8At1g31440840034SH3 domain-containing protein 1 (SH3P1)F:clathrin binding;P:unknown;C:endomembrane system, plasma membrane;MOBPFVAO.I.H.G.S.X.
0.2115.8At1g59900842284AT-E1 ALPHAencodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC)O.I.H.G.S.X.
0.146.8At4g11410826745short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.H.G.S.X.
0.051.1At5g50520835120nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BOPFMAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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