Co-expression analysis

Gene ID Zm.12629.1.S1_at
Gene name double-strand break repair protein MRE11
Homology with ArabidopsisSimilar to At4g19100: unknown protein (HF=6e-2)
Module size 16 genes
NF 0.32
%ile 30.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8896.70.99Zm.12629.1.S1_atBU079978double-strand break repair protein MRE11-6e-2At4g19100unknown proteinO.I.H.G.S.X.
0.5267.30.99Zm.17513.1.A1_atBM074532MFP1 attachment factor 1-5e+0At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.5267.30.99ZmAffx.104.1.S1_atAI665536--1e+1At5g11425unknown proteinO.I.H.G.S.X.
0.4149.70.99Zm.13585.1.S1_atAY107846.1hypothetical protein LOC100274237-2e+0At4g11060MTSSB (mitochondrially targeted single-stranded DNA binding protein)O.I.H.G.S.X.
0.4048.50.99Zm.6592.1.A1_atAI467742kelch motif family protein-2e-2At1g51540-O.I.H.G.S.X.
0.3538.90.99Zm.13412.1.S1_x_atCF630246--2e-7At2g36230APG10 (ALBINO AND PALE GREEN 10)O.I.H.G.S.X.
0.3437.20.99Zm.14014.1.A1_atCF050089NADH-ubiquinone oxidoreductase 23 kDa subunit-2e-62At1g79010NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)O.I.H.G.S.X.
0.3336.00.99Zm.2658.1.A1_atCK348010--3e-2At4g15840protein bindingO.I.H.G.S.X.
0.3233.40.99ZmAffx.1076.1.A1_atAI948113hypothetical protein LOC100279228-3e+0At4g36900RAP2.10 (related to AP2 10)O.I.H.G.S.X.
0.3233.40.99ZmAffx.485.1.A1_atAI691349--8e-1Atmg00140-O.I.H.G.S.X.
0.3029.80.99Zm.12679.1.S1_atBU571579hypothetical protein LOC100217156-7e-1At5g42510disease resistance-responsive family proteinO.I.H.G.S.X.
0.2928.10.99ZmAffx.824.1.A1_atAI770504--3e+0At5g20370serine-rich protein-relatedO.I.H.G.S.X.
0.2521.30.99Zm.14270.1.A1_a_atAY105925.1hypothetical protein LOC100216603-2e+0At3g56510TBP-binding protein, putativeO.I.H.G.S.X.
0.2115.50.99Zm.17637.1.S1_atCK368490--5e+0At2g22450riboflavin biosynthesis protein, putativeO.I.H.G.S.X.
0.158.60.99ZmAffx.21.1.S1_atAI600464--3e+0At5g05300unknown proteinO.I.H.G.S.X.
0.125.90.99Zm.1483.1.S1_atBE050487--1e+0At5g13470unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.999.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.199.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.999.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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