Co-expression analysis

Gene ID Zm.12534.1.A1_at
Gene name hypothetical protein LOC100192944
Homology with ArabidopsisSimilar to At5g20520: WAV2 (WAVY GROWTH 2) (HF=5e-5)
Module size 6 genes
NF 0.17
%ile 11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4861.30.94Zm.12534.1.A1_atCF628471hypothetical protein LOC100192944-5e-5At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.4658.40.95Zm.5851.6.S1_x_atL46399.1MADS box protein-2e-8At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.2928.10.95Zm.7755.1.A1_atCN845074hypothetical protein LOC100275494-3e-18At1g16460ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)O.I.H.G.S.X.
0.2014.20.94Zm.18394.1.A1_atCO534001ATP-dependent Clp protease ATP-binding subunit clpX-1e-27At5g53350CLPXO.I.H.G.S.X.
0.072.90.95Zm.4664.3.S1_x_atAY108266.1--4e+0At5g65070MAF4 (MADS AFFECTING FLOWERING 4)O.I.H.G.S.X.
0.062.30.95Zm.13132.1.S1_atAY107386.1hypothetical protein LOC100274327-2e-7At1g55900TIM50O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.399.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.499.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.699.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM206313Upper pulvinus 5 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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