Co-expression analysis

Gene ID	Zm.1248.1.A1_at
Gene name	hypothetical protein LOC100274169
Homology with Arabidopsis	Similar to At3g16240: DELTA-TIP (HF=1e+0)
Module size	23 genes
NF	0.31
%ile	29.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.85	Zm.1248.1.A1_at	CF649214	hypothetical protein LOC100274169	-	1e+0	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.89	ZmAffx.314.1.A1_at	AI670496	-	-	3e+0	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.93	RPTR-Zm-U89963-1_x_at	RPTR-Zm-U89963-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.92	ZmAffx.715.1.S1_at	AI739762	-	-	2e-1	At1g04670	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.91	Zm.13447.1.S1_at	CK786856	chaperone protein dnaJ 10	-	2e-11	At1g21080	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.93	Zm.10252.1.A1_at	AY108029.1	hypothetical protein LOC100279693	-	2e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.94	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.93	ZmAffx.96.1.S1_at	AI665410	-	-	1e+1	At4g39130	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.93	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.92	ZmAffx.302.1.S1_at	AI670435	-	-	8e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.91	ZmAffx.940.1.S1_at	AI820350	hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.92	ZmAffx.144.1.S1_at	AI667795	-	-	8e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.92	Zm.9756.1.A1_at	BM338065	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.93	Zm.16180.1.A1_at	AW091200	-	-	5e-2	At2g28440	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.92	Zm.12480.1.A1_at	AI901944	hypothetical protein LOC100194202	-	4e-1	At4g15393	CYP702A5	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.92	Zm.13452.2.A1_at	AY105619.1	zinc transporter 4	-	5e-4	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.92	ZmAffx.695.1.A1_at	AI737430	hypothetical protein LOC100192562	-	2e-1	At3g45248	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.92	ZmAffx.628.1.S1_at	AI715056	-	-	1e+1	At5g13340	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.91	Zm.16259.3.A1_a_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.93	ZmAffx.937.1.S1_at	AI820257	-	-	8e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.94	Zm.8795.1.A1_a_at	BM337357	-	-	5e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.90	ZmAffx.1443.1.S1_at	11990232-7	-	-	0	Atcg00280	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.4	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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