Co-expression analysis

Gene ID	Zm.12478.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g40630: ubiquitin family protein (HF=7e-2)
Module size	21 genes
NF	0.81
%ile	97.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.97	Zm.12478.1.A1_at	CF043347	-	-	7e-2	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.93	99.3	0.98	ZmAffx.1355.1.S1_at	40794996-45	-	-	7e-138	Atmg00640	-	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.98	ZmAffx.545.1.A1_at	AI712101	-	-	6e-1	At2g17170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.97	ZmAffx.161.1.S1_at	AI668163	Hypothetical protein LOC100193378	-	3e+0	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.98			-	-				O.I.	H.G.	S.X.	Please select
0.86	96.3	0.97	ZmAffx.133.1.S1_at	AI666263	-	-	4e+0	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.98	ZmAffx.1353.1.S1_at	40794996-44	-	-	6e-1	At5g35338	-	O.I.	H.G.	S.X.	Please select
0.84	95.8	0.98	ZmAffx.1421.1.S1_at	40794996-96	-	-	3e+0	At5g52270	vesicle transport protein-related	O.I.	H.G.	S.X.	Please select
0.84	95.8	0.98	ZmAffx.1358.1.S1_at	40794996-159	-	-	0	Atmg01170	-	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.17118.1.A1_at	BG842132	-	-	3e+0	At4g25300	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.82	94.6	0.97	Zm.12132.2.S1_at	CF015301	polyubiquitin 2	-	1e-53	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	O.I.	H.G.	S.X.	Please select
0.79	92.8	0.98	ZmAffx.1390.1.S1_at	40794996-65	-	-	0	Atmg00900	-	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.98	ZmAffx.285.1.S1_at	AI670418	-	-	1e+1	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	ZmAffx.1184.1.A1_at	AW927978	-	-	1e-2	At2g38640	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	ZmAffx.1188.1.S1_at	BE025244	-	-	3e+0	At5g46620	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.97	ZmAffx.809.1.A1_at	AI770393	-	-	4e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.97	ZmAffx.1330.1.S1_at	40794996-38	-	-	3e+0	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	ZmAffx.524.1.S1_at	AI711679	-	-	1e+1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	ZmAffx.1473.1.S1_at	40794996-100	-	-	2e-1	At4g31290	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.68	86.1	0.98	ZmAffx.1524.1.S1_at	40794996-121	-	-	3e+0	At3g58020	heat shock protein binding	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	ZmAffx.142.1.A1_at	AI667789	-	-	2e+1	At5g09978	PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.6	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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