Co-expression analysis

Gene ID Zm.12459.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g44600: CYP71 (CYCLOPHILIN71) (HF=9e-6)
Module size 6 genes
NF 0.28
%ile 24.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.96Zm.12459.1.A1_atBE186592--9e-6At3g44600CYP71 (CYCLOPHILIN71)O.I.H.G.S.X.
0.6785.80.96Zm.17287.1.A1_atCK144321--5e+0At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.6077.80.97Zm.10900.1.A1_atBM332136--1e-3At1g20830unknown proteinO.I.H.G.S.X.
0.2318.60.98Zm.10652.1.S1_atCN844569hypothetical protein LOC100191856-4e-2At1g23040hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.147.70.97Zm.8576.1.A1_atBM074724caffeic acid 3-O-methyltransferase-4e-2At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.125.90.97Zm.4257.1.S1_atAW076388respiratory burst oxidase protein A-5e-12At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.93Zm.6054.2.A1_atAY104332.1--4e-2At1g09550pectinacetylesterase, putativeO.I.H.G.S.X.
0.5775.10.94Zm.16625.1.S1_atCO532626hypothetical protein LOC100192896-1e-9At3g58460ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)O.I.H.G.S.X.
0.5065.70.96Zm.17536.1.A1_atCK370765hypothetical protein LOC100273145-5e-1At2g46890oxidoreductase, acting on the CH-CH group of donorsO.I.H.G.S.X.
0.4658.40.93Zm.1030.1.S1_atAY106168.1--6e+0At5g24655LSU4 (RESPONSE TO LOW SULFUR 4)O.I.H.G.S.X.
0.4455.70.92Zm.16958.3.S1_x_atCO528527--4e+0At2g29263unknown proteinO.I.H.G.S.X.
0.4352.80.94ZmAffx.1169.1.S1_atAW681259hypothetical protein LOC100280320-3e+0At4g36540BEE2 (BR Enhanced Expression 2)O.I.H.G.S.X.
0.4048.50.94Zm.9539.1.A1_atAY105652.1--7e-8At3g14205phosphoinositide phosphatase family proteinO.I.H.G.S.X.
0.4048.50.96Zm.4727.1.S1_atAI738206hypothetical protein LOC100273187-5e+0At5g33390glycine-rich proteinO.I.H.G.S.X.
0.3641.30.96Zm.10405.1.S1_atAY108533.1PHD finger protein-1e-7At3g42790AL3 (ALFIN-LIKE 3)O.I.H.G.S.X.
0.3336.00.94Zm.17446.1.A1_atCK347991hypothetical protein LOC100191157-2e-3At3g13430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3336.00.95Zm.18492.1.S1_atCO518846hypothetical protein LOC100278656-3e-1At5g04850VPS60.2O.I.H.G.S.X.
0.3336.00.95Zm.8024.1.A1_atBM072669--4e-1At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.3336.00.97Zm.7704.1.A1_atBM079575hypothetical protein LOC100278612-5e-3At1g62240unknown proteinO.I.H.G.S.X.
0.3131.60.92Zm.17082.1.S1_s_atAY108221.1--4e-12At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.2928.10.94Zm.1954.1.A1_atAY104136.1--1e+0At5g18748unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.17251.1.A1_atBM336955--5e+0At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.2724.60.96Zm.18631.1.A1_atCO520789--2e+0At3g61710autophagy protein Apg6 familyO.I.H.G.S.X.
0.2724.60.96Zm.15392.1.A1_atBM347807--4e+0At5g37350RIO1 family proteinO.I.H.G.S.X.
0.2622.70.93Zm.12266.1.S1_atBM382546hypothetical protein LOC100194012-2e-3At3g17365catalytic/ methyltransferaseO.I.H.G.S.X.
0.2521.30.95Zm.18101.1.S1_x_atCA827356--5e+0At4g36020CSDP1 (cold shock domain protein 1)O.I.H.G.S.X.
0.2521.30.96Zm.2478.2.A1_atAI737453Hypothetical protein LOC100191471-7e-2At5g60490FLA12O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.298.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320465protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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