Co-expression analysis

Gene ID Zm.12459.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g44600: CYP71 (CYCLOPHILIN71) (HF=9e-6)
Module size 6 genes
NF 0.28
%ile 24.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.96Zm.12459.1.A1_atBE186592--9e-6At3g44600CYP71 (CYCLOPHILIN71)O.I.H.G.S.X.
0.6785.80.96Zm.17287.1.A1_atCK144321--5e+0At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.6077.80.97Zm.10900.1.A1_atBM332136--1e-3At1g20830unknown proteinO.I.H.G.S.X.
0.2318.60.98Zm.10652.1.S1_atCN844569hypothetical protein LOC100191856-4e-2At1g23040hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.147.70.97Zm.8576.1.A1_atBM074724caffeic acid 3-O-methyltransferase-4e-2At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.125.90.97Zm.4257.1.S1_atAW076388respiratory burst oxidase protein A-5e-12At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.298.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320465protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1606987_at, orthologous to the query gene, Zm.12459.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7189.51606987_atAt3g44600hypothetical protein LOC100260919-1e+0At2g31750UGT74D1 (UDP-glucosyl transferase 74D1)O.I.H.G.S.X.
0.5577.31612186_atAt3g44600hypothetical protein LOC100241494-1e+1At5g18250unknown proteinO.I.H.G.S.X.
0.3548.51621366_s_atAt3g44600hypothetical protein LOC100259669-4e-1At3g20450-O.I.H.G.S.X.
0.1010.31621009_s_atAt3g44600--9e-2At4g01590unknown proteinO.I.H.G.S.X.
0.045.21611903_atAt3g44600hypothetical protein LOC100253792-1e-7At5g18120ATAPRL7 (APR-like 7)O.I.H.G.S.X.
0.034.21609392_s_atAt3g44600hypothetical protein LOC100242395-2e-47At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



Back to the CoP portal site

Back to the KAGIANA project homepage