Co-expression analysis

Gene ID Zm.12459.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g44600: CYP71 (CYCLOPHILIN71) (HF=9e-6)
Module size 6 genes
NF 0.28
%ile 24.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.96Zm.12459.1.A1_atBE186592--9e-6At3g44600CYP71 (CYCLOPHILIN71)O.I.H.G.S.X.
0.6785.80.96Zm.17287.1.A1_atCK144321--5e+0At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.6077.80.97Zm.10900.1.A1_atBM332136--1e-3At1g20830unknown proteinO.I.H.G.S.X.
0.2318.60.98Zm.10652.1.S1_atCN844569hypothetical protein LOC100191856-4e-2At1g23040hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.147.70.97Zm.8576.1.A1_atBM074724caffeic acid 3-O-methyltransferase-4e-2At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.125.90.97Zm.4257.1.S1_atAW076388respiratory burst oxidase protein A-5e-12At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.298.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320465protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig16607_at, orthologous to the query gene, Zm.12459.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1Contig16607_atAt3g44600--7e-21At3g44600CYP71 (CYCLOPHILIN71)O.I.H.G.S.X.
0.4053.1Contig16660_atAt3g44600--5e+0At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.
0.3138.6Contig5436_s_atAt3g44600--6e-1At1g44820aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putativeO.I.H.G.S.X.
0.2021.1Contig4469_atAt3g44600--4e-63At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.1716.9Contig19041_atAt3g44600--5e+0At4g22850-O.I.H.G.S.X.
0.075.8Contig14950_atAt3g44600--3e+0At5g63250glycosyl hydrolase family protein 17O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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