Co-expression analysis

Gene ID Zm.12402.1.S1_at
Gene name hypothetical protein LOC100193926
Homology with ArabidopsisSimilar to At4g33000: CBL10 (CALCINEURIN B-LIKE 10) (HF=3e-7)
Module size 6 genes
NF 0.50
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.11.00Zm.12402.1.S1_atAY109060.1hypothetical protein LOC100193926-3e-7At4g33000CBL10 (CALCINEURIN B-LIKE 10)O.I.H.G.S.X.
0.6785.81.00ZmAffx.571.1.S1_atAI714687Hypothetical protein LOC100191288-3e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.5571.61.00Zm.15817.1.A1_atD87044.1protein kinase catalytic domain-3e-8At5g04870CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)O.I.H.G.S.X.
0.5571.61.00ZmAffx.828.1.S1_atAI770529--3e+0At2g32890RALFL17 (RALF-LIKE 17)O.I.H.G.S.X.
0.4759.91.00Zm.10332.1.A1_atBQ048110--2e+0At3g28990unknown proteinO.I.H.G.S.X.
0.2928.11.00Zm.5495.1.S1_atAY103870.1--1e-30At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.60.99Zm.15463.1.A1_atCO520005hypothetical protein LOC100279195-4e-18At5g43600UAH (UREIDOGLYCOLATE AMIDOHYDROLASE)O.I.H.G.S.X.
0.6381.10.98Zm.13431.1.A1_atAY110841.1hypothetical LOC542282-2e+0At3g54940-O.I.H.G.S.X.
0.5571.60.99Zm.6440.1.A1_atAI691780hypothetical protein LOC100191807-4e+0At3g11340UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.5571.60.99ZmAffx.756.1.S1_atAI745958--8e-1At5g15420unknown proteinO.I.H.G.S.X.
0.5369.10.99Zm.10386.1.A1_atBU051031--9e+0At4g19550transcription regulator/ zinc ion bindingO.I.H.G.S.X.
0.5267.30.99Zm.18441.1.S1_atCO523498hypothetical protein LOC100273640-5e-10At5g26740unknown proteinO.I.H.G.S.X.
0.5065.71.00Zm.2605.1.S1_atAY105350.1hypothetical protein LOC100192590-2e+0At5g416706-phosphogluconate dehydrogenase family proteinO.I.H.G.S.X.
0.4455.70.99Zm.6444.2.A1_atBM379891hypothetical protein LOC100192600-8e-64At5g0296040S ribosomal protein S23 (RPS23B)O.I.H.G.S.X.
0.4455.70.99ZmAffx.833.1.A1_atAI770565--3e+0At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.4455.71.00Zm.13513.1.S1_atCO528571hypothetical protein LOC100193945-2e-3At2g18030peptide methionine sulfoxide reductase family proteinO.I.H.G.S.X.
0.4048.50.99ZmAffx.573.1.A1_atAI714739hypothetical protein LOC100280041-1e+1At5g11416unknown proteinO.I.H.G.S.X.
0.4048.50.99Zm.9008.2.A1_a_atAI665626delta zein structural18 /// prolamin /// prolamin-3e+0At3g27080TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)O.I.H.G.S.X.
0.3641.30.99ZmAffx.1127.1.S1_atAW324638--2e-1At1g27380RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)O.I.H.G.S.X.
0.3641.30.99ZmAffx.109.1.A1_atAI665560--8e-1At4g09270unknown proteinO.I.H.G.S.X.
0.3538.90.98Zm.3904.1.S1_atAY109271.1seed specific protein Bn15D17A-3e-1At3g2850060S acidic ribosomal protein P2 (RPP2C)O.I.H.G.S.X.
0.3538.90.99Zm.19033.1.S1_atBG837480--1e-2At1g25230purple acid phosphatase family proteinO.I.H.G.S.X.
0.3538.90.99Zm.11596.1.A1_atBM379205--7e-2At2g46308unknown proteinO.I.H.G.S.X.
0.3336.00.99ZmAffx.1046.1.A1_atAI881792--8e-1At1g79160unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.13459.1.A1_atCO532418hypothetical protein LOC100279797-7e-12At5g58240bis(5'-adenosyl)-triphosphatase, putativeO.I.H.G.S.X.
0.3336.00.99ZmAffx.563.1.A1_atAI714606--3e+0At5g67560ATARLA1D (ADP-ribosylation factor-like A1D)O.I.H.G.S.X.
0.3233.41.00Zm.1039.3.S1_atAI677375Hypothetical protein LOC100194359-3e+0At4g18580unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.1742.1.S1_atAW424599UDP-glucose 4-epimerase GEPI48-6e-14At4g10960UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)O.I.H.G.S.X.
0.3131.61.00Zm.13984.1.A1_atAY108018.1phytosulfokine peptide precursor1-1e+0At5g27860unknown proteinO.I.H.G.S.X.
0.3029.80.99Zm.3959.1.A1_atAY109274.1hypothetical protein LOC100193090-4e-21At1g34020transporter-relatedO.I.H.G.S.X.
0.2928.10.99Zm.13292.1.S1_atCA826976--2e-2At5g19450CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19)O.I.H.G.S.X.
0.2928.10.99Zm.1105.2.S1_atAW453248hypothetical protein LOC100194018-3e-2At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.2928.10.99ZmAffx.1208.1.A1_atBE186278--8e-1At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2928.10.99Zm.13869.1.A1_x_atAF099436.1R2R3MYB-domain protein-4e+0At2g04910glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.2928.11.00ZmAffx.220.1.A1_atAI670228--3e+0At4g14890ferredoxin family proteinO.I.H.G.S.X.
0.2724.60.99Zm.6008.1.S1_atCA401170hypothetical protein LOC100216743-4e-2At5g56600PRF3 (PROFILIN 3)O.I.H.G.S.X.
0.2724.60.99Zm.4352.1.S1_atAY107631.1--3e-1At1g47970unknown proteinO.I.H.G.S.X.
0.2622.70.99Zm.15324.1.A1_atCB350660--4e-3At4g24230ACBP3 (ACYL-COA-BINDING DOMAIN 3)O.I.H.G.S.X.
0.2622.70.99Zm.53.1.S1_atAB021176.1root cap periphery gene2-2e-1At3g19430late embryogenesis abundant protein-related / LEA protein-relatedO.I.H.G.S.X.
0.2521.30.99Zm.4608.1.A1_atCD995777hypothetical protein LOC100192096-2e+0Atmg01180-O.I.H.G.S.X.
0.2521.30.99Zm.6366.1.S1_atCF634348transmembrane emp24 domain-containing protein 3-1e-5At3g07680emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.2521.30.99Zm.365.1.A1_atAB062095.1response regulator 9-3e-4At3g16857ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)O.I.H.G.S.X.
0.2521.30.99--O.I.H.G.S.X.
0.2521.30.99ZmAffx.705.1.A1_atAI738178hypothetical protein LOC100276328-2e-1At1g18265unknown proteinO.I.H.G.S.X.
0.2521.30.99Zm.11943.1.S1_atCO523092dihydroflavonol-4-reductase-7e-4At5g42800DFR (DIHYDROFLAVONOL 4-REDUCTASE)O.I.H.G.S.X.
0.2521.30.99Zm.3157.2.A1_atCD447942ubiquitin carboxyl-terminal hydrolase 6-5e-15At1g51710UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)O.I.H.G.S.X.
0.2521.30.99Zm.13288.1.S1_atCA826847--4e+0At2g45070SEC61 BETAO.I.H.G.S.X.
0.2521.31.00Zm.16895.1.A1_atBM075234--2e+0At5g15100PIN8 (PIN-FORMED 8)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.498.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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