Co-expression analysis

Gene ID	Zm.12402.1.S1_at
Gene name	hypothetical protein LOC100193926
Homology with Arabidopsis	Similar to At4g33000: CBL10 (CALCINEURIN B-LIKE 10) (HF=3e-7)
Module size	6 genes
NF	0.50
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	1.00	Zm.12402.1.S1_at	AY109060.1	hypothetical protein LOC100193926	-	3e-7	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.571.1.S1_at	AI714687	Hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	Zm.15817.1.A1_at	D87044.1	protein kinase catalytic domain	-	3e-8	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	ZmAffx.828.1.S1_at	AI770529	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	O.I.	H.G.	S.X.	Please select
0.47	59.9	1.00	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	1.00	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1612269_at, orthologous to the query gene, Zm.12402.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1612269_at	At4g33000	hypothetical protein LOC100259377	-	2e-12	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.59	80.6	1620136_at	At4g33000	hypothetical LOC100251752	-	8e-6	At4g15960	catalytic/ epoxide hydrolase	O.I.	H.G.	S.X.	Please select
0.50	72.7	1607906_at	At4g33000	hypothetical protein LOC100255309	-	4e-8	At3g60360	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1620987_at	At4g33000	hypothetical protein LOC100249592	-	1e-14	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1616205_at	At4g33000	hypothetical protein LOC100251247	-	7e-10	At3g02700	NC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1611011_at	At4g33000	hypothetical protein LOC100252286	-	3e-43	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1613107_at	At4g33000	hypothetical protein LOC100247830	-	1e+0	At5g60880	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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