Co-expression analysis

Gene ID	Zm.12402.1.S1_at
Gene name	hypothetical protein LOC100193926
Homology with Arabidopsis	Similar to At4g33000: CBL10 (CALCINEURIN B-LIKE 10) (HF=3e-7)
Module size	6 genes
NF	0.50
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	1.00	Zm.12402.1.S1_at	AY109060.1	hypothetical protein LOC100193926	-	3e-7	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.571.1.S1_at	AI714687	Hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	Zm.15817.1.A1_at	D87044.1	protein kinase catalytic domain	-	3e-8	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	ZmAffx.828.1.S1_at	AI770529	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	O.I.	H.G.	S.X.	Please select
0.47	59.9	1.00	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	1.00	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8539.1.S1_a_at, orthologous to the query gene, Zm.12402.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	Ta.8539.1.S1_a_at	At4g33000	-	-	3e-24	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.8457.2.A1_at	At4g33000	-	-	1e+1	At4g00220	JLO (JAGGED LATERAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.8244.1.S1_at	At4g33000	-	-	3e-14	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.12796.2.S1_s_at	At4g33000	-	-	2e-3	At5g56550	OXS3 (OXIDATIVE STRESS 3)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.27783.1.S1_at	At4g33000	-	-	2e-19	At4g15415	ATB' GAMMA	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.128545.1.S1_at	At4g33000	-	-	4e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.18914.2.S1_x_at	At4g33000	-	-	6e-1	At3g62220	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.122452.1.A1_at	At4g33000	-	-	4e+0	At1g68880	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.22972.2.S1_a_at	At4g33000	-	-	4e+0	At4g21215	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.12796.1.S1_s_at	At4g33000	-	-	8e-16	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.16999.1.S1_x_at	At4g33000	-	-	8e-6	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.9207.1.S1_at	At4g33000	-	-	1e-8	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.3348.1.S1_a_at	At4g33000	-	-	3e-52	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.8457.1.A1_at	At4g33000	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.11930.1.S1_s_at	At4g33000	-	-	3e-5	At2g30330	GCN5L1 family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.18914.1.A1_a_at	At4g33000	-	-	2e-1	At2g18915	LKP2 (LOV KELCH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.8034.1.A1_at	At4g33000	-	-	2e-3	At3g56480	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.460.1.S1_a_at	At4g33000	-	-	1e-4	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.11252.1.S1_at	At4g33000	-	-	7e-1	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.6405.1.S1_at	At4g33000	-	-	2e+0	At1g27050	ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.13995.1.S1_at	At4g33000	-	-	1e-3	At5g56190	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.3365.1.S1_at	At4g33000	-	-	6e-1	At4g22220	ISU1	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.55278.1.S1_x_at	At4g33000	Plasma membrane H+-ATPase	-	4e+0	At5g27238	-	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.1584.1.S1_a_at	At4g33000	-	-	3e-18	At3g20970	NFU4	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.7856.1.S1_at	At4g33000	-	-	5e-1	At1g54820	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.18914.1.A1_x_at	At4g33000	-	-	2e-1	At2g18915	LKP2 (LOV KELCH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.34031.1.S1_at	At4g33000	-	-	2e-6	At5g03905	hesB-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.14532.1.S1_at	At4g33000	-	-	4e-45	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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