Co-expression analysis

Gene ID	Zm.12402.1.S1_at
Gene name	hypothetical protein LOC100193926
Homology with Arabidopsis	Similar to At4g33000: CBL10 (CALCINEURIN B-LIKE 10) (HF=3e-7)
Module size	6 genes
NF	0.50
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	1.00	Zm.12402.1.S1_at	AY109060.1	hypothetical protein LOC100193926	-	3e-7	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.571.1.S1_at	AI714687	Hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	Zm.15817.1.A1_at	D87044.1	protein kinase catalytic domain	-	3e-8	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	ZmAffx.828.1.S1_at	AI770529	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	O.I.	H.G.	S.X.	Please select
0.47	59.9	1.00	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	1.00	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig13587_s_at, orthologous to the query gene, Zm.12402.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	Contig13587_s_at	At4g33000	-	-	6e-10	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig16432_at	At4g33000	-	-	1e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig13538_at	At4g33000	-	-	2e+0	At4g36430	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig21935_at	At4g33000	-	-	1e+0	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig11033_at	At4g33000	-	-	6e-7	At2g01690	binding	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig20030_at	At4g33000	-	-	6e+0	At3g47965	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig7762_at	At4g33000	-	-	8e-4	At2g32590	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig19283_at	At4g33000	-	-	2e+1	Atmg00840	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig125_at	At4g33000	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig8424_at	At4g33000	-	-	2e-3	At1g76220	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig11493_at	At4g33000	-	-	5e-9	At5g42950	GYF domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig9932_at	At4g33000	-	-	6e-7	At5g03530	RABC2A (RAB GTPASE HOMOLOG C2A)	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig725_s_at	At4g33000	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig9752_at	At4g33000	-	-	3e+0	At2g11651	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig5857_s_at	At4g33000	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig21333_at	At4g33000	-	-	3e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	rbaal22m07_at	At4g33000	-	-	2e-1	At1g06440	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please select
0.33	42.6	HVSMEi0002I06r2_x_at	At4g33000	-	-	3e+0	At3g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig5792_at	At4g33000	-	-	2e+0	At2g31730	ethylene-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig10783_at	At4g33000	-	-	5e-26	At5g63440	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig11731_at	At4g33000	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig17511_at	At4g33000	-	-	8e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig7178_s_at	At4g33000	-	-	2e+0	At4g35900	FD	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig8321_at	At4g33000	-	-	9e-3	At4g00026	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig21186_at	At4g33000	-	-	1e-1	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig12398_at	At4g33000	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig14329_at	At4g33000	-	-	4e-4	At1g04870	PRMT10	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig19484_at	At4g33000	-	-	3e-2	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig8332_at	At4g33000	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig15839_s_at	At4g33000	-	-	3e+0	At5g61650	CYCP4	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig15463_at	At4g33000	-	-	5e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig17874_at	At4g33000	-	-	4e+0	At1g44010	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig12449_at	At4g33000	-	-	3e-10	At2g16400	BLH7 (bell1-like homeodomain 7)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig8687_at	At4g33000	-	-	2e-1	At5g17740	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig11259_at	At4g33000	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig6041_at	At4g33000	-	-	2e-1	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig18044_at	At4g33000	-	-	1e+0	At3g47070	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	HS09L19u_s_at	At4g33000	-	-	2e+0	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig19949_at	At4g33000	-	-	7e+0	At3g02620	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig11475_at	At4g33000	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig7129_at	At4g33000	-	-	5e+0	At5g01750	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig7194_at	At4g33000	-	-	2e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig10787_at	At4g33000	-	-	5e-5	At4g27880	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig5117_at	At4g33000	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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