Co-expression analysis

Gene ID Zm.12402.1.S1_at
Gene name hypothetical protein LOC100193926
Homology with ArabidopsisSimilar to At4g33000: CBL10 (CALCINEURIN B-LIKE 10) (HF=3e-7)
Module size 6 genes
NF 0.50
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.11.00Zm.12402.1.S1_atAY109060.1hypothetical protein LOC100193926-3e-7At4g33000CBL10 (CALCINEURIN B-LIKE 10)O.I.H.G.S.X.
0.6785.81.00ZmAffx.571.1.S1_atAI714687Hypothetical protein LOC100191288-3e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.5571.61.00Zm.15817.1.A1_atD87044.1protein kinase catalytic domain-3e-8At5g04870CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)O.I.H.G.S.X.
0.5571.61.00ZmAffx.828.1.S1_atAI770529--3e+0At2g32890RALFL17 (RALF-LIKE 17)O.I.H.G.S.X.
0.4759.91.00Zm.10332.1.A1_atBQ048110--2e+0At3g28990unknown proteinO.I.H.G.S.X.
0.2928.11.00Zm.5495.1.S1_atAY103870.1--1e-30At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.498.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g33000, orthologous to the query gene, Zm.12402.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At4g33000829437CBL10 (CALCINEURIN B-LIKE 10)Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.O.I.H.G.S.X.
0.4862.5At5g64380836559fructose-1,6-bisphosphatase family proteinF:phosphoric ester hydrolase activity;P:carbohydrate metabolic process;C:chloroplast;BOMPFAO.I.H.G.S.X.
0.4659.8At5g14260831276SET domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOO.I.H.G.S.X.
0.4558.3At4g26555828762immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFAO.I.H.G.S.X.
0.4152.4At5g52100835286crr1 (chlororespiration reduction 1)Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex.O.I.H.G.S.X.
0.4152.4At4g26520828758fructose-bisphosphate aldolase, cytoplasmicF:fructose-bisphosphate aldolase activity;P:pentose-phosphate shunt, response to hypoxia;C:unknown;OMBPFO.I.H.G.S.X.
0.4152.4At5g35790833559G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1)Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root.O.I.H.G.S.X.
0.3948.4At3g09580820115amine oxidase family proteinF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast, chloroplast envelope;BOMPFAO.I.H.G.S.X.
0.3846.7At3g14930820722HEME1F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAPO.I.H.G.S.X.
0.3846.7At4g15560827230CLA1 (CLOROPLASTOS ALTERADOS 1)Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in ArabidopsisO.I.H.G.S.X.
0.3846.7At4g19985827743GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:N-terminal protein myristoylation, metabolic process;C:unknown;BPOAO.I.H.G.S.X.
0.3745.0At1g08520837374CHLDF:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVAO.I.H.G.S.X.
0.3745.0At4g27600828871pfkB-type carbohydrate kinase family proteinF:kinase activity;P:unknown;C:chloroplast;BOMPAFO.I.H.G.S.X.
0.3643.6At2g36000818173mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMO.I.H.G.S.X.
0.3541.6At2g26540817195HEMDF:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAFO.I.H.G.S.X.
0.3541.6At5g62790836400DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.O.I.H.G.S.X.
0.3541.6At2g30170817569catalyticF:catalytic activity;P:biological_process unknown;C:chloroplast;MFOPBAO.I.H.G.S.X.
0.3541.6At4g15110827177CYP97B3member of CYP97BO.I.H.G.S.X.
0.3541.6At5g57030835806LUT2 (LUTEIN DEFICIENT 2)Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclaseO.I.H.G.S.X.
0.3439.8At4g32570829392TIFY8 (TIFY DOMAIN PROTEIN 8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.3439.8At3g63490825524ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMPO.I.H.G.S.X.
0.3439.8At5g47840834835AMK2 (Adenosine monophosphate kinase)F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPAO.I.H.G.S.X.
0.3338.1At4g35440829696CLC-E (CHLORIDE CHANNEL E)Enclodes a choride channel protein that is localized to the thlakoid membrane.O.I.H.G.S.X.
0.3338.1At1g21350838734antioxidant/ oxidoreductaseF:oxidoreductase activity, antioxidant activity;P:unknown;C:chloroplast;OBPAMO.I.H.G.S.X.
0.3338.1At4g25080828611CHLM (magnesium-protoporphyrin IX methyltransferase)Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.O.I.H.G.S.X.
0.3338.1At2g24270816962ALDH11A3Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.O.I.H.G.S.X.
0.3338.1At5g22830832346ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)putative Mg(2+) transport proteinO.I.H.G.S.X.
0.3235.7At3g20930821642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBAO.I.H.G.S.X.
0.3235.7At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.3235.7At2g47940819406DEGP2Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.O.I.H.G.S.X.
0.3235.7At3g13740820583URF 4-relatedF:RNA binding, ribonuclease III activity;P:RNA processing;C:unknown;BOPO.I.H.G.S.X.
0.3235.7At5g59250836043sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane, chloroplast envelope;BFMOPAVO.I.H.G.S.X.
0.3133.8At1g07320837243RPL4encodes a plastid ribosomal protein L4O.I.H.G.S.X.
0.3133.8At1g35340840423ATP-dependent protease La (LON) domain-containing proteinF:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;BOPFMO.I.H.G.S.X.
0.3133.8At4g24090828509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMAO.I.H.G.S.X.
0.3032.1At1g14030837964ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putativeF:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFOO.I.H.G.S.X.
0.3032.1At3g17040820961HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.O.I.H.G.S.X.
0.3032.1At3g56650824832thylakoid lumenal 20 kDa proteinF:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBOO.I.H.G.S.X.
0.3032.1At1g05190839273emb2394 (embryo defective 2394)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPMO.I.H.G.S.X.
0.3032.1At3g23700821951S1 RNA-binding domain-containing proteinF:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFAO.I.H.G.S.X.
0.3032.1At4g30950829220FAD6 (FATTY ACID DESATURASE 6)Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.O.I.H.G.S.X.
0.2930.3At2g44920819101thylakoid lumenal 15 kDa protein, chloroplastF:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPVO.I.H.G.S.X.
0.2930.3At2g35450818110catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPMFO.I.H.G.S.X.
0.2930.3At3g1312082050030S ribosomal protein S10, chloroplast, putativeF:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPFO.I.H.G.S.X.
0.2930.3At4g18370827564DEG5 (DEGP PROTEASE 5)Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).O.I.H.G.S.X.
0.2930.3At3g26900822306shikimate kinase family proteinF:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAFO.I.H.G.S.X.
0.2830.3At3g07670819958SET domain-containing proteinF:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:biological_process unknown;C:chloroplast;MFPOO.I.H.G.S.X.
0.2830.3At5g14460831297pseudouridine synthase/ transporterF:pseudouridine synthase activity, transporter activity;P:tRNA processing, pseudouridine synthesis, RNA modification, tRNA pseudouridine synthesis;C:chloroplast;BOMFAPO.I.H.G.S.X.
0.2830.3At1g64355842742unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.2830.3At1g12860837843SCRM2 (SCREAM 2)Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.O.I.H.G.S.X.
0.2830.3At5g58330835945malate dehydrogenase (NADP), chloroplast, putativeF:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFAO.I.H.G.S.X.
0.2830.3At4g25910828697NFU3Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.O.I.H.G.S.X.
0.2726.2At1g20810838672immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMFO.I.H.G.S.X.
0.2726.2At1g74960843835FAB1 (FATTY ACID BIOSYNTHESIS 1)Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.O.I.H.G.S.X.
0.2726.2At3g01480821137CYP38 (cyclophilin 38)Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.O.I.H.G.S.X.
0.2726.2At4g14540827101NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOBO.I.H.G.S.X.
0.2726.2At2g43030818905ribosomal protein L3 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFPO.I.H.G.S.X.
0.2624.4At3g01370821288ATCFM2 (CRM FAMILY MEMBER 2)Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing.O.I.H.G.S.X.
0.2624.4At4g24750828577-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOAO.I.H.G.S.X.
0.2624.4At1g22700838876tetratricopeptide repeat (TPR)-containing proteinEncodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.O.I.H.G.S.X.
0.2624.4At1g35420840434dienelactone hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;BFOPMAO.I.H.G.S.X.
0.2624.4At2g43560818958immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BMOPFAO.I.H.G.S.X.
0.2624.4At5g53490835431thylakoid lumenal 17.4 kDa protein, chloroplastthylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.O.I.H.G.S.X.
0.2624.4At2g26550817196HO2 (HEME OXYGENASE 2)encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin.O.I.H.G.S.X.
0.2522.6At2g20890816623PSB29Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane–delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.O.I.H.G.S.X.
0.2522.6At4g01050827921hydroxyproline-rich glycoprotein family proteinhydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain.O.I.H.G.S.X.
0.2522.6At1g74470843788geranylgeranyl reductaseEncodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.O.I.H.G.S.X.
0.2522.6At4g30580829181ATS2Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal.O.I.H.G.S.X.
0.2522.6At2g42130818813unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, chloroplast, plastoglobule;POO.I.H.G.S.X.
0.2420.7At5g14910831343heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.H.G.S.X.
0.2319.3At1g32160840108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.2319.3At5g53860835467emb2737 (embryo defective 2737)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PO.I.H.G.S.X.
0.2217.5At1g12250837778thylakoid lumenal protein-relatedF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPVO.I.H.G.S.X.
0.2217.5At5g45170834553CbbY protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOO.I.H.G.S.X.
0.1811.4At1g25290839113ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10)F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage