Co-expression analysis

Gene ID	Zm.12385.1.S1_at
Gene name	hypothetical protein LOC100274490
Homology with Arabidopsis	Similar to At1g61660: basic helix-loop-helix (bHLH) family protein (HF=1e+0)
Module size	15 genes
NF	0.41
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	95.9	0.97	Zm.12385.1.S1_at	BQ578257	hypothetical protein LOC100274490	-	1e+0	At1g61660	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.4860.1.S1_at	CD437324	mRNA decapping enzyme 2	-	9e-1	At5g13570	DCP2 (DECAPPING 2)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.13519.1.A1_at	AY108464.1	-	-	3e-5	At4g32070	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.15213.1.A1_at	BM331832	-	-	3e+0	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.17497.1.A1_at	BG266429	hypothetical protein LOC100273930	-	3e+0	Atmg00140	-	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.3289.1.A1_at	AI979535	-	-	2e+0	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.6049.3.A1_a_at	AI734480	phosphatidylinositol transporter/ transporter	-	3e-3	At1g76640	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.19063.1.S1_at	CO532335	hypothetical protein LOC100274479	-	2e-1	At5g58140	PHOT2 (PHOTOTROPIN 2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.6045.2.A1_a_at	BM337093	guanine nucleotide-binding protein beta subunit-like protein	-	2e-10	At1g18080	ATARCA	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.749.1.S1_at	AY291061.1	photosystem II subunit PsbS1	-	8e-7	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.6528.1.A1_at	AY103780.1	hypothetical protein LOC100277187	-	9e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.2134.1.A1_at	AI734434	-	-	9e-2	At2g41780	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.6527.2.A1_at	BM338554	hypothetical protein LOC100273254	-	5e-1	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.3251.1.A1_at	CK145401	hypothetical protein LOC100280262	-	2e-3	At3g13180	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.4369.2.A1_x_at	CF016250	hypothetical protein LOC100276142	-	5e+0	At2g37590	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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