Co-expression analysis

Gene ID	Zm.12384.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g23340: ckl10 (Casein Kinase I-like 10) (HF=5e-4)
Module size	6 genes
NF	0.61
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.99	Zm.12384.1.A1_at	AY111304.1	-	-	5e-4	At3g23340	ckl10 (Casein Kinase I-like 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.8774.1.A1_at	BM075843	-	-	5e+0	At5g20100	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.13919.1.A1_at	AF057523.1	hypoxically induced transcript 3	-	5e+0	At5g04210	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	Zm.13919.1.S1_at	AF057523.1	hypoxically induced transcript 3	-	5e+0	At5g04210	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	Zm.8097.1.A1_at	BM336868	-	-	2e+0	At3g21940	receptor protein kinase-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	ZmAffx.296.1.S1_at	AI670429	-	-	8e-1	At2g37950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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