CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12358.1.S1_at

Gene name hypothetical protein LOC100274476
Homology with Arabidopsis Similar to At3g01050: MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) (HF=1e+0)

Module size 26 genes

NF 0.29

%ile 26.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 0.95 Zm.12358.1.S1_at CO534920 hypothetical protein LOC100274476 - 1e+0 At3g01050 MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) O.I. H.G. S.X.
0.60 77.8 0.97 Zm.12345.1.A1_at BM416967 mediator complex subunit 10 CG5057-PA - 2e-3 At1g26665 - O.I. H.G. S.X.
0.48 61.3 0.97 Zm.7756.1.A1_at BQ538566 hypothetical protein LOC100279912 - 1e+0 At1g28140 unknown protein O.I. H.G. S.X.
0.44 55.7 0.97 Zm.9708.1.A1_at BQ538651 DNA binding protein - 4e-1 At4g16160 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein O.I. H.G. S.X.
0.44 55.7 0.97 Zm.2583.1.S1_at CN845475 ATP/GTP binding protein - 8e+0 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) O.I. H.G. S.X.
0.42 51.3 0.97 Zm.7776.1.A1_at BM331974 hypothetical protein LOC100193214 - 7e-3 At3g49550 unknown protein O.I. H.G. S.X.
0.39 45.6 0.98 Zm.18983.1.A1_at AI795441 L-allo-threonine aldolase - 9e-10 At1g08630 THA1 (Threonine Aldolase 1) O.I. H.G. S.X.
0.37 42.3 0.98 Zm.2010.1.S1_at AW563146 - - 4e+0 At1g26355 SP1L1 (SPIRAL1-LIKE1) O.I. H.G. S.X.
0.36 41.3 0.98 Zm.6325.1.A1_at CF625024 snRK1-interacting protein 1 - 6e+0 At5g24355 unknown protein O.I. H.G. S.X.
0.35 38.9 0.97 Zm.879.1.A1_at BM379556 hypothetical protein LOC100276616 - 7e+0 At5g35300 unknown protein O.I. H.G. S.X.
0.33 36.0 0.97 ZmAffx.126.1.A1_at AI665940 - - 3e+0 At5g14910 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.31 31.6 0.97 Zm.752.1.S1_a_at U89897.1 golgi associated protein se-wap41 /// hypothetical protein LOC100274298 - 3e-145 At3g02230 RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) O.I. H.G. S.X.
0.29 28.1 0.97 Zm.2846.1.A1_at BG842354 - - 1e+1 At3g22570 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.29 28.1 0.98 Zm.7779.1.A1_at CF630385 3-hydroxybutyryl-CoA dehydratase - 4e-8 At4g16210 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) O.I. H.G. S.X.
0.28 28.1 0.98 Zm.7750.4.S1_at AW499152 - - 3e-28 At1g75780 TUB1 O.I. H.G. S.X.
0.27 24.6 0.98 Zm.18078.1.S1_at CF048273 hypothetical protein LOC100193322 - 2e+0 At1g43667 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.27 24.6 0.98 Zm.8621.1.A1_at BM338847 - - 4e+0 At1g75300 isoflavone reductase, putative O.I. H.G. S.X.
0.22 16.9 0.98 Zm.297.1.S1_at CO527021 CMP-KDO synthetase1 - 2e-13 At1g53000 cytidylyltransferase family O.I. H.G. S.X.
0.20 14.2 0.98 Zm.8818.1.A1_at BM268303 - - 9e-2 At2g01500 PFS2 (PRETTY FEW SEEDS 2) O.I. H.G. S.X.
0.19 12.8 0.98 Zm.15669.1.S1_at CA403955 plant-specific domain TIGR01570 family protein - 1e-4 At3g25640 unknown protein O.I. H.G. S.X.
0.18 11.6 0.98 ZmAffx.1017.1.A1_at AI881523 Hypothetical protein LOC100193713 - 3e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.17 10.6 0.97 Zm.5048.1.A1_a_at AF015522.1 - - 2e-96 At5g58420 40S ribosomal protein S4 (RPS4D) O.I. H.G. S.X.
0.16 9.4 0.97 Zm.13679.1.A1_at AW424469 chemocyanin - 9e-5 At1g72230 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.15 8.6 0.98 Zm.16316.1.A1_at CF244157 ATP binding protein - 2e-1 At5g19210 DEAD/DEAH box helicase, putative O.I. H.G. S.X.
0.15 8.6 0.97 Zm.2581.1.A1_at BM078550 - - 4e-1 At4g15460 glycine-rich protein O.I. H.G. S.X.
0.09 4.0 0.98 Zm.8039.1.A1_a_at BM348574 hydrolase, NUDIX family protein - 2e-13 At5g20070 ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.6	0.95	Zm.12358.1.S1_at	CO534920	hypothetical protein LOC100274476	-	1e+0	At3g01050	MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR)	O.I.	H.G.	S.X.
0.60	77.8	0.97	Zm.12345.1.A1_at	BM416967	mediator complex subunit 10 CG5057-PA	-	2e-3	At1g26665	-	O.I.	H.G.	S.X.
0.48	61.3	0.97	Zm.7756.1.A1_at	BQ538566	hypothetical protein LOC100279912	-	1e+0	At1g28140	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.97	Zm.9708.1.A1_at	BQ538651	DNA binding protein	-	4e-1	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.
0.44	55.7	0.97	Zm.2583.1.S1_at	CN845475	ATP/GTP binding protein	-	8e+0	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	O.I.	H.G.	S.X.
0.42	51.3	0.97	Zm.7776.1.A1_at	BM331974	hypothetical protein LOC100193214	-	7e-3	At3g49550	unknown protein	O.I.	H.G.	S.X.
0.39	45.6	0.98	Zm.18983.1.A1_at	AI795441	L-allo-threonine aldolase	-	9e-10	At1g08630	THA1 (Threonine Aldolase 1)	O.I.	H.G.	S.X.
0.37	42.3	0.98	Zm.2010.1.S1_at	AW563146	-	-	4e+0	At1g26355	SP1L1 (SPIRAL1-LIKE1)	O.I.	H.G.	S.X.
0.36	41.3	0.98	Zm.6325.1.A1_at	CF625024	snRK1-interacting protein 1	-	6e+0	At5g24355	unknown protein	O.I.	H.G.	S.X.
0.35	38.9	0.97	Zm.879.1.A1_at	BM379556	hypothetical protein LOC100276616	-	7e+0	At5g35300	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	0.97	ZmAffx.126.1.A1_at	AI665940	-	-	3e+0	At5g14910	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.752.1.S1_a_at	U89897.1	golgi associated protein se-wap41 /// hypothetical protein LOC100274298	-	3e-145	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.2846.1.A1_at	BG842354	-	-	1e+1	At3g22570	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.29	28.1	0.98	Zm.7779.1.A1_at	CF630385	3-hydroxybutyryl-CoA dehydratase	-	4e-8	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.
0.28	28.1	0.98	Zm.7750.4.S1_at	AW499152	-	-	3e-28	At1g75780	TUB1	O.I.	H.G.	S.X.
0.27	24.6	0.98	Zm.18078.1.S1_at	CF048273	hypothetical protein LOC100193322	-	2e+0	At1g43667	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.27	24.6	0.98	Zm.8621.1.A1_at	BM338847	-	-	4e+0	At1g75300	isoflavone reductase, putative	O.I.	H.G.	S.X.
0.22	16.9	0.98	Zm.297.1.S1_at	CO527021	CMP-KDO synthetase1	-	2e-13	At1g53000	cytidylyltransferase family	O.I.	H.G.	S.X.
0.20	14.2	0.98	Zm.8818.1.A1_at	BM268303	-	-	9e-2	At2g01500	PFS2 (PRETTY FEW SEEDS 2)	O.I.	H.G.	S.X.
0.19	12.8	0.98	Zm.15669.1.S1_at	CA403955	plant-specific domain TIGR01570 family protein	-	1e-4	At3g25640	unknown protein	O.I.	H.G.	S.X.
0.18	11.6	0.98	ZmAffx.1017.1.A1_at	AI881523	Hypothetical protein LOC100193713	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.17	10.6	0.97	Zm.5048.1.A1_a_at	AF015522.1	-	-	2e-96	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.
0.16	9.4	0.97	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.
0.15	8.6	0.98	Zm.16316.1.A1_at	CF244157	ATP binding protein	-	2e-1	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.
0.15	8.6	0.97	Zm.2581.1.A1_at	BM078550	-	-	4e-1	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.
0.09	4.0	0.98	Zm.8039.1.A1_a_at	BM348574	hydrolase, NUDIX family protein	-	2e-13	At5g20070	ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.1 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.3 96.9 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.2 96.9 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.6 96.4 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.5 96.3 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.3 96.1 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.3 96.1 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.1 95.9 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.5	97.1	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.3	96.9	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.6	96.4	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Zm.12358.1.S1_at
Gene name	hypothetical protein LOC100274476
Homology with Arabidopsis	Similar to At3g01050: MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) (HF=1e+0)
Module size	26 genes
NF	0.29
%ile	26.6

Co-expression analysis

Gene ID Zm.12358.1.S1_at Gene name hypothetical protein LOC100274476 Homology with ArabidopsisSimilar to At3g01050: MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) (HF=1e+0) Module size 26 genes NF 0.29 %ile 26.6

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.12358.1.S1_at

Gene name hypothetical protein LOC100274476
Homology with Arabidopsis Similar to At3g01050: MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) (HF=1e+0)

Module size 26 genes

NF 0.29

%ile 26.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera