Co-expression analysis

Gene ID Zm.12357.1.A1_at
Gene name hypothetical protein LOC100272551
Homology with ArabidopsisSimilar to At5g02030: RPL (REPLUMLESS) (HF=3e-5)
Module size 10 genes
NF 0.42
%ile 48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8696.30.93Zm.12357.1.A1_atCB381715hypothetical protein LOC100272551-3e-5At5g02030RPL (REPLUMLESS)O.I.H.G.S.X.
0.5065.70.96Zm.11651.1.A1_atBM379693hypothetical protein LOC100273198-3e-1At4g02700SULTR3O.I.H.G.S.X.
0.4658.40.94Zm.8307.2.A1_x_atCF635305--4e-1At5g08150unknown proteinO.I.H.G.S.X.
0.4352.80.94Zm.13017.1.A1_atCK986139hypothetical protein LOC100272256-3e-25At1g59900AT-E1 ALPHAO.I.H.G.S.X.
0.3742.30.93Zm.6732.1.S1_s_atAF440221.1HMG-like nucleosome/chromatin assembly factor D-3e-11At1g20696HMGB3 (HIGH MOBILITY GROUP B 3)O.I.H.G.S.X.
0.3538.90.94Zm.5776.1.A1_atCO520963hypothetical protein LOC100273913-9e-2At2g47140short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3336.00.96Zm.4242.1.S1_atCD990106--9e-2At3g57240BG3 (BETA-1,3-GLUCANASE 3)O.I.H.G.S.X.
0.3233.40.96Zm.12248.1.S1_atBM338038Hypothetical protein LOC100216999-4e+0At3g59870unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.8946.1.A1_atBM339897Guanylyl cyclase-like protein-7e-4At5g05930guanylyl cyclase-related (GC1)O.I.H.G.S.X.
0.2928.10.94Zm.11954.1.A1_atBM382100hypothetical protein LOC100216665-1e+0At4g19590DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.998.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.190.8GSM375794Deep-sowing 10d treatment UCZ, biological rep1GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing conditionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage