Co-expression analysis

Gene ID	Zm.12345.1.A1_at
Gene name	mediator complex subunit 10 CG5057-PA
Homology with Arabidopsis	Similar to At1g26665: - (HF=2e-3)
Module size	7 genes
NF	0.70
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.98	Zm.12345.1.A1_at	BM416967	mediator complex subunit 10 CG5057-PA	-	2e-3	At1g26665	-	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.7756.1.A1_at	BQ538566	hypothetical protein LOC100279912	-	1e+0	At1g28140	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.18983.1.A1_at	AI795441	L-allo-threonine aldolase	-	9e-10	At1g08630	THA1 (Threonine Aldolase 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.7779.1.A1_at	CF630385	3-hydroxybutyryl-CoA dehydratase	-	4e-8	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.6325.1.A1_at	CF625024	snRK1-interacting protein 1	-	6e+0	At5g24355	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2583.1.S1_at	CN845475	ATP/GTP binding protein	-	8e+0	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.7776.1.A1_at	BM331974	hypothetical protein LOC100193214	-	7e-3	At3g49550	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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