Co-expression analysis

Gene ID Zm.12317.1.S1_at
Gene name ethylene-responsive transcription factor 4
Homology with ArabidopsisSimilar to At5g44210: ERF9 (ERF DOMAIN PROTEIN 9) (HF=2e-12)
Module size 20 genes
NF 0.33
%ile 31.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8495.80.95Zm.12317.1.S1_atAY106969.1ethylene-responsive transcription factor 4-2e-12At5g44210ERF9 (ERF DOMAIN PROTEIN 9)O.I.H.G.S.X.
0.5166.40.97Zm.8421.1.A1_atBM340353hypothetical protein LOC100216763-7e+0At3g12300unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.6630.2.S1_atCD447067hypothetical protein LOC100193888-3e-2At1g15750TPL (TOPLESS)O.I.H.G.S.X.
0.3945.60.97Zm.17282.1.S1_atCK369877--1e+1At5g32597unknown proteinO.I.H.G.S.X.
0.3742.30.96Zm.3118.1.S1_atAY103914.1hypothetical protein LOC100274547-9e-3At2g3722029 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putativeO.I.H.G.S.X.
0.3742.30.98Zm.6631.1.A1_atAY108443.1hypothetical protein LOC100191632-1e-2At5g11100SYTDO.I.H.G.S.X.
0.3742.30.96Zm.12304.1.A1_atCF637007hypothetical protein LOC100274389-2e+0At1g64720CP5O.I.H.G.S.X.
0.3641.30.96Zm.4839.1.S1_atAY103614.1aldehyde dehydrogenase family 7 member A1-6e-33At1g54100ALDH7B4 (Aldehyde Dehydrogenase 7B4)O.I.H.G.S.X.
0.3641.30.97Zm.2715.1.A1_atAW066985--5e+0At4g12990unknown proteinO.I.H.G.S.X.
0.3437.20.97Zm.13514.2.S1_a_atAY108547.1phytoene synthase 2-2e-6At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseO.I.H.G.S.X.
0.3336.00.97Zm.13530.1.A1_atAY108362.1--2e-6At1g30270CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)O.I.H.G.S.X.
0.2928.10.96Zm.7023.2.S1_x_atAI734540surfactant protein B containing protein-9e-1At2g27250CLV3 (CLAVATA3)O.I.H.G.S.X.
0.2622.70.97Zm.5293.1.A1_atAI619137hypothetical protein LOC100279147-5e-1At3g55420unknown proteinO.I.H.G.S.X.
0.2318.60.97Zm.8395.1.S1_atBU051027IDP2362 protein-1e+0At1g62690unknown proteinO.I.H.G.S.X.
0.2318.60.97Zm.14513.2.A1_atBM380808hypothetical protein LOC100272299-2e-43At1g09200histone H3O.I.H.G.S.X.
0.2216.90.97Zm.6569.5.A1_atCF637455--2e-1At3g01570glycine-rich protein / oleosinO.I.H.G.S.X.
0.2115.50.97Zm.5439.1.S1_atCA831388serine/threonine-protein kinase 12-5e-2At5g38790unknown proteinO.I.H.G.S.X.
0.2115.50.97Zm.13760.1.A1_atAY105817.1--5e+0At5g27280zinc finger (DNL type) family proteinO.I.H.G.S.X.
0.1710.60.98Zm.7965.1.A1_atBM074125hypothetical protein LOC100277125-3e-1At5g27440unknown proteinO.I.H.G.S.X.
0.147.70.97Zm.11077.1.A1_atBM336854--2e+1At4g03205coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.598.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM205436B73xMo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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