Co-expression analysis

Gene ID Zm.12304.1.A1_at
Gene name hypothetical protein LOC100274389
Homology with ArabidopsisSimilar to At1g64720: CP5 (HF=2e+0)
Module size 10 genes
NF 0.41
%ile 47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.96Zm.12304.1.A1_atCF637007hypothetical protein LOC100274389-2e+0At1g64720CP5O.I.H.G.S.X.
0.4658.40.97Zm.13514.2.S1_a_atAY108547.1phytoene synthase 2-2e-6At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseO.I.H.G.S.X.
0.4658.40.98Zm.6630.2.S1_atCD447067hypothetical protein LOC100193888-3e-2At1g15750TPL (TOPLESS)O.I.H.G.S.X.
0.4251.30.97Zm.2715.1.A1_atAW066985--5e+0At4g12990unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.12301.1.S1_atBM381154hypothetical protein LOC100193414-5e-8At2g37340RSZ33O.I.H.G.S.X.
0.3641.30.97Zm.9326.1.A1_atBM332291hypothetical protein LOC100193353-5e+0At5g09600SDH3-1O.I.H.G.S.X.
0.3233.40.97Zm.13530.1.A1_atAY108362.1--2e-6At1g30270CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)O.I.H.G.S.X.
0.3233.40.98Zm.17282.1.S1_atCK369877--1e+1At5g32597unknown proteinO.I.H.G.S.X.
0.3029.80.97ZmAffx.529.1.S1_atAI711694Hypothetical protein LOC100191956-8e-1At1g63230pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2521.30.98Zm.6631.1.A1_atAY108443.1hypothetical protein LOC100191632-1e-2At5g11100SYTDO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.298.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM375791Deep-sowing 10d treatment GA3, biological rep1GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing conditionLink to GEO
4.296.0GSM375788Deep-sowing 10d treatment Control, biological rep1GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing conditionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage