Co-expression analysis

Gene ID Zm.1228.2.A1_at
Gene name Hypothetical protein LOC100191844
Homology with ArabidopsisSimilar to At5g10840: endomembrane protein 70, putative (HF=1e-34)
Module size 6 genes
NF 0.31
%ile 29.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.95Zm.1228.2.A1_atAI795581Hypothetical protein LOC100191844-1e-34At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.4759.90.95ZmAffx.189.2.A1_a_atAI668397hypothetical protein LOC100278348-8e-1At1g70510KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)O.I.H.G.S.X.
0.3844.20.96Zm.5789.10.A1_x_atAI737302hypothetical protein LOC100192516-6e-14At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.3336.00.96Zm.17983.1.A1_atBG840853hypothetical protein LOC100276768-1e+0At2g40910F-box protein-relatedO.I.H.G.S.X.
0.1710.60.96Zm.6538.1.A1_atCK348062stress-related protein-7e+0Atmg00270-O.I.H.G.S.X.
0.104.60.95Zm.858.1.A1_atBM073310hypothetical protein LOC100216691-2e+0At4g12350MYB42 (myb domain protein 42)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.597.8GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
5.697.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1606997_at, orthologous to the query gene, Zm.1228.2.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7189.51606997_atAt5g10840hypothetical protein LOC100241540-2e-55At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.4969.31616036_atAt5g10840hypothetical protein LOC100241363-7e-4At4g23630BTI1 (VIRB2-INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.4666.51610842_a_atAt5g10840hypothetical protein LOC100244638-1e+0At4g27280calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4564.61612217_atAt5g10840hypothetical LOC100246657-3e-7At1g12050fumarylacetoacetase, putativeO.I.H.G.S.X.
0.4260.11613652_atAt5g10840hypothetical protein LOC100248770-1e-54At1g34550EMB2756 (EMBRYO DEFECTIVE 2756)O.I.H.G.S.X.
0.3853.61618227_atAt5g10840hypothetical protein LOC100256050-4e-20At1g73570suppressor of lin-12-like protein-related / sel-1 protein-relatedO.I.H.G.S.X.
0.3751.71620312_atAt5g10840hypothetical protein LOC100254135-7e-56At1g49040SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)O.I.H.G.S.X.
0.3751.71609093_atAt5g10840hypothetical protein LOC100245204-3e-5At1g01170ozone-responsive stress-related protein, putativeO.I.H.G.S.X.
0.3650.71611661_atAt5g10840hypothetical protein LOC100245913-2e-5At5g18900oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.3345.71617593_atAt5g10840hypothetical protein LOC100253716-7e-86At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.3345.71611560_atAt5g10840hypothetical protein LOC100265794-8e-62At4g38790ER lumen protein retaining receptor family proteinO.I.H.G.S.X.
0.3141.31611812_atAt5g10840hypothetical protein LOC100263785-4e-73At5g20920EIF2 BETAO.I.H.G.S.X.
0.3141.31620346_atAt5g10840hypothetical protein LOC100257815-2e-9At1g65540calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3039.41619318_atAt5g10840hypothetical protein LOC100248394-5e+0At5g65840-O.I.H.G.S.X.
0.2937.71615585_atAt5g10840hypothetical protein LOC100246276-1e-17At1g62020coatomer protein complex, subunit alpha, putativeO.I.H.G.S.X.
0.2937.71620700_atAt5g10840hypothetical protein LOC100261522-4e-20At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.2632.01615440_atAt5g10840hypothetical protein LOC100257857-9e-5At5g49945unknown proteinO.I.H.G.S.X.
0.2530.51619471_atAt5g10840hypothetical protein LOC100243217-1e-112At3g46060ATRAB8AO.I.H.G.S.X.
0.2530.51607294_atAt5g10840hypothetical protein LOC100246786-4e-112At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.2327.51607405_atAt5g10840hypothetical protein LOC100261003-2e-6At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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