Co-expression analysis

Gene ID	Zm.1228.2.A1_at
Gene name	Hypothetical protein LOC100191844
Homology with Arabidopsis	Similar to At5g10840: endomembrane protein 70, putative (HF=1e-34)
Module size	6 genes
NF	0.31
%ile	29.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	Zm.1228.2.A1_at	AI795581	Hypothetical protein LOC100191844	-	1e-34	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.95	ZmAffx.189.2.A1_a_at	AI668397	hypothetical protein LOC100278348	-	8e-1	At1g70510	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.5789.10.A1_x_at	AI737302	hypothetical protein LOC100192516	-	6e-14	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.17983.1.A1_at	BG840853	hypothetical protein LOC100276768	-	1e+0	At2g40910	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.96	Zm.6538.1.A1_at	CK348062	stress-related protein	-	7e+0	Atmg00270	-	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.858.1.A1_at	BM073310	hypothetical protein LOC100216691	-	2e+0	At4g12350	MYB42 (myb domain protein 42)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	97.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.23710.2.A1_x_at, orthologous to the query gene, Zm.1228.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	Ta.23710.2.A1_x_at	At5g10840	-	-	1e-31	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.28820.1.S1_a_at	At5g10840	-	-	3e-31	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.2841.1.S1_s_at	At5g10840	-	-	2e-2	At4g20980	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.2358.3.S1_at	At5g10840	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.23710.1.S1_x_at	At5g10840	-	-	5e-77	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.1815.2.S1_s_at	At5g10840	-	-	5e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.2358.3.S1_x_at	At5g10840	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.12395.1.S1_at	At5g10840	-	-	2e-2	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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