Co-expression analysis

Gene ID Zm.12225.1.A1_at
Gene name DIP1
Homology with ArabidopsisSimilar to At3g14340: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.52
%ile 68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.99Zm.12225.1.A1_atCA403034DIP1-2e+0At3g14340unknown proteinO.I.H.G.S.X.
0.8395.60.99Zm.12691.1.A1_atBU645208zinc finger C-x8-C-x5-C-x3-H type family protein-2e+0At4g16990RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)O.I.H.G.S.X.
0.8395.60.99Zm.1269.1.A1_atBM350862--5e+0At5g53980ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)O.I.H.G.S.X.
0.8094.00.99Zm.12690.1.S1_atCA831966hypothetical protein LOC100191357-5e-23At4g12790ATP-binding family proteinO.I.H.G.S.X.
0.3233.40.99Zm.7127.1.A1_atBM266653nonspecific lipid-transfer protein-8e+0At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.2318.60.99Zm.221.1.A1_atU28376.1calcium-dependent protein kinase-4e-25At3g20410CPK9 (calmodulin-domain protein kinase 9)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.00.99Zm.12688.1.S1_atCF625305hypothetical protein LOC100279814-2e-2At2g25970KH domain-containing proteinO.I.H.G.S.X.
0.8094.00.99Zm.5356.1.A1_s_atAI619132--2e-2At5g55860unknown proteinO.I.H.G.S.X.
0.7389.90.99Zm.12801.1.A1_atCO524502MON1-2e+0At4g15053unknown proteinO.I.H.G.S.X.
0.6785.80.98Zm.16349.1.S1_atCD973880hypothetical protein LOC100272608-4e+0At5g03415DPBO.I.H.G.S.X.
0.6785.80.99Zm.7140.1.A1_atCK37062440S ribosomal protein S2-7e-13At3g5749040S ribosomal protein S2 (RPS2D)O.I.H.G.S.X.
0.6785.80.99Zm.3529.2.S1_atCK369278hypothetical protein LOC100193299-1e+0At1g75050-O.I.H.G.S.X.
0.6785.80.99Zm.6683.1.S1_atAI372385--4e-1At4g21970unknown proteinO.I.H.G.S.X.
0.6077.80.99Zm.1555.1.A1_atBM347846--2e-4At3g14660CYP72A13O.I.H.G.S.X.
0.6077.80.99Zm.3457.1.A1_atAW171820hypothetical protein LOC100193080-2e-19At3g21640TWD1 (TWISTED DWARF 1)O.I.H.G.S.X.
0.5976.10.99Zm.16364.1.S1_atCF348928hypothetical protein LOC100192976-3e-1At1g2740060S ribosomal protein L17 (RPL17A)O.I.H.G.S.X.
0.5775.10.98Zm.6252.1.A1_atCF630074hypothetical protein LOC100273493-8e-9At1g76200unknown proteinO.I.H.G.S.X.
0.5571.60.98Zm.7121.2.A1_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.5369.10.97Zm.6775.1.A1_atAY105702.1ethylene response factor-2e-1At1g15360SHN1 (SHINE 1)O.I.H.G.S.X.
0.5369.10.98Zm.15018.1.S1_atCD437133--6e-1At2g19150pectinesterase family proteinO.I.H.G.S.X.
0.5065.70.99Zm.721.1.A1_atBM267834Salt-inducible putative protein serine/threonine/tyrosine kinase-1e-33At1g06700serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.5065.70.99Zm.14501.4.S1_x_atCK849957hypothetical protein LOC100191411-3e-46At5g22060ATJ2O.I.H.G.S.X.
0.5065.70.99Zm.2952.1.A1_a_atCF629660hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.
0.5065.70.99Zm.7121.2.S1_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.4861.30.98Zm.12687.1.S1_x_atCO520828auxin efflux carrier component 1c-2e-7At5g57090EIR1 (ETHYLENE INSENSITIVE ROOT 1)O.I.H.G.S.X.
0.4658.40.98Zm.4943.1.A1_atBG320867hypothetical protein LOC100272864-1e-1At4g27920unknown proteinO.I.H.G.S.X.
0.4658.40.98ZmAffx.1021.1.S1_atAI881561--3e+0At5g18240MYR1 (MYb-related protein 1)O.I.H.G.S.X.
0.4658.40.98Zm.2944.1.S1_atCK369774hypothetical protein LOC100192584-1e-9At5g41260protein kinase family proteinO.I.H.G.S.X.
0.4455.70.98Zm.1232.1.S1_atBE552969kinesin light chain-3e+0At1g03730unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.2141.1.A1_atBM347927--2e-7At1g73980phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.4455.70.98Zm.16171.1.A1_atCF633781profilin A-4e-10At4g29350PFN2 (PROFILIN 2)O.I.H.G.S.X.
0.4352.80.99Zm.6675.1.A1_atBM337828--4e-31At4g12650-O.I.H.G.S.X.
0.4251.30.98Zm.1691.1.S1_a_atAY108152.1hypothetical protein LOC100191436-2e-37At2g30390FC2 (FERROCHELATASE 2)O.I.H.G.S.X.
0.4048.50.99Zm.6676.1.S1_atAW927976nuclear transcription factor Y subunit C-2-2e-3At1g08970NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)O.I.H.G.S.X.
0.3945.60.98Zm.6103.1.A1_atCA403951UBA and UBX domain-containing protein-2e-4At4g04210PUX4O.I.H.G.S.X.
0.3844.20.97Zm.14352.1.A1_a_atAF371280.1corn Hageman factor inhibitor /// trypsin/factor XIIA inhibitor /// Hageman factor inhibitor-2e+0At1g55780metal ion bindingO.I.H.G.S.X.
0.3844.20.98Zm.14476.1.A1_a_atAY105708.1protein disulfide isomerase /// protein disulfide isomerase-1e-3At5g60640ATPDIL1-4 (PDI-LIKE 1-4)O.I.H.G.S.X.
0.3641.30.97Zm.5308.1.A1_atCK144693hypothetical protein LOC100193786-1e-10At1g04830RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.3641.30.97Zm.14027.1.A1_atAW499409initiator binding protein-5e-25At1g07540TRFL2 (TRF-LIKE 2)O.I.H.G.S.X.
0.3641.30.98Zm.17698.1.S1_atCK369330--5e-1At4g25130peptide methionine sulfoxide reductase, putativeO.I.H.G.S.X.
0.3641.30.98Zm.16590.3.A1_atAY104237.1DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide-2e-34At5g51940NRPB6AO.I.H.G.S.X.
0.3641.30.99Zm.6079.1.S1_atBM268227ribosomal protein L25-1e-53At2g39460RPL23AA (RIBOSOMAL PROTEIN L23AA)O.I.H.G.S.X.
0.3641.30.98Zm.17931.1.A1_atCK827676hydrogen-transporting ATP synthase, rotational mechanism-5e+0At4g34265unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.7300.1.S1_atU62748.1acidic ribosomal protein P2a-2-2e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.3538.90.98Zm.13239.2.A1_atBG517281hypothetical protein LOC100274453-1e-32At2g34430LHB1B1O.I.H.G.S.X.
0.3336.00.96Zm.207.1.S1_atCF047698ribosomal protein S21-1e-13At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.3336.00.97Zm.16481.1.A1_atCD996342--5e+0At5g59780MYB59 (MYB DOMAIN PROTEIN 59)O.I.H.G.S.X.
0.3336.00.97Zm.1599.2.A1_atAY106613.1--2e+0At1g52240ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11)O.I.H.G.S.X.
0.3336.00.99Zm.13859.1.S1_atAF439724.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.3336.00.99Zm.15932.1.A1_atAJ577238.1beta3-glucuronyltransferase-8e-1At5g28610-O.I.H.G.S.X.
0.3336.00.99Zm.7126.2.S1_atAY110592.1--2e-9At3g51460RHD4 (ROOT HAIR DEFECTIVE4)O.I.H.G.S.X.
0.3131.60.96Zm.737.1.A1_a_atD45403.1cysteine protease-2e-23At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.3131.60.98Zm.2451.2.S1_atAY107882.1--9e-19At2g42600ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)O.I.H.G.S.X.
0.3131.60.99Zm.13238.1.S1_atCF635234--4e+0At4g04745unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.6614.1.A1_atCO533019coronatine-insensitive protein 1-1e+0At2g26030F-box family proteinO.I.H.G.S.X.
0.3131.60.99Zm.4061.1.S1_atAI834355--3e+0At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.2GSM258535Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3GSE10243Profiling expression changes caused by a segmental aneuploid in maizeLink to GEO
3.895.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM258533Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2GSE10243Profiling expression changes caused by a segmental aneuploid in maizeLink to GEO
3.094.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM258537Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 4GSE10243Profiling expression changes caused by a segmental aneuploid in maizeLink to GEO
2.993.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM206312Upper pulvinus 2 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
2.692.9GSM258536DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 3GSE10243Profiling expression changes caused by a segmental aneuploid in maizeLink to GEO
2.692.9GSM258532DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 1GSE10243Profiling expression changes caused by a segmental aneuploid in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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