Co-expression analysis

Gene ID Zm.12184.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g11960: PGRL1B (PGR5-Like B) (HF=6e-10)
Module size 6 genes
NF 0.54
%ile 70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.11.00Zm.12184.1.A1_atBM380021--6e-10At4g11960PGRL1B (PGR5-Like B)O.I.H.G.S.X.
0.6077.81.00Zm.7054.1.S1_atBM331766actin-depolymerizing factor 6-6e-4At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.H.G.S.X.
0.5065.71.00Zm.15242.1.A1_atBM340075--1e+1At3g16712unknown proteinO.I.H.G.S.X.
0.4658.41.00Zm.3851.4.A1_atCD441077--1e+0At5g12470unknown proteinO.I.H.G.S.X.
0.4251.31.00ZmAffx.89.1.A1_atAI665353hypothetical protein LOC100277768-1e+1At5g20560beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.3844.21.00Zm.17928.1.A1_atBQ538697hypothetical protein LOC100217238-4e+0At5g09660PMDH2 (peroxisomal NAD-malate dehydrogenase 2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.50.98Zm.5789.5.S1_x_atX80375.1gamma-tubulin 1-9e-155At3g61650TUBG1 (GAMMA-TUBULIN)O.I.H.G.S.X.
0.6077.80.99Zm.13646.1.A1_atAY107248.1--3e-2At3g10290phosphate translocator-relatedO.I.H.G.S.X.
0.4861.30.99Zm.5661.1.A1_atAY107527.1--1e+0At2g33585unknown proteinO.I.H.G.S.X.
0.4861.30.99Zm.2402.1.A1_atCO524786transformer-2 protein-9e+0At3g06490MYB108 (myb domain protein 108)O.I.H.G.S.X.
0.4759.90.99Zm.10520.1.S1_atBQ529214hypothetical protein LOC100274894-2e-4At4g20940leucine-rich repeat family proteinO.I.H.G.S.X.
0.4658.40.99Zm.10563.1.S1_atCF007885hypothetical protein LOC100193826-3e-6At3g10850GLY2O.I.H.G.S.X.
0.4658.40.99Zm.5884.1.A1_atBM340350hypothetical protein LOC100192097-8e-2At2g35880-O.I.H.G.S.X.
0.4658.40.99Zm.3610.1.A1_atAW065778hypothetical protein LOC100276901-2e+0At4g04360unknown proteinO.I.H.G.S.X.
0.4658.40.99Zm.12300.1.A1_atCF626520ruBisCO large subunit-binding protein subunit alpha-1e-37At2g28000CPN60A (CHAPERONIN-60ALPHA)O.I.H.G.S.X.
0.4455.70.99Zm.2245.2.A1_atCF634375hypothetical protein LOC100217191-2e-1At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.
0.4455.70.99Zm.15892.1.S1_atAI712275SC3 protein-9e-13At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.4251.30.99ZmAffx.1103.1.A1_atAW191100--1e+1At5g43700ATAUX2-11 (AUXIN INDUCIBLE 2-11)O.I.H.G.S.X.
0.4048.50.99Zm.14759.1.S1_atCB280800hypothetical protein LOC100191677-4e-2At5g46640DNA-binding family proteinO.I.H.G.S.X.
0.4048.51.00Zm.13228.1.S1_atCA452580LHT1-5e+0At4g17585unknown proteinO.I.H.G.S.X.
0.3844.20.99Zm.10507.1.S1_atCA827194--9e-6At5g53905unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.6874.1.S1_atBM080052Hypothetical protein LOC100193230-4e-3At1g47490ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)O.I.H.G.S.X.
0.3641.30.99Zm.13943.1.S1_atCK826833CUE domain containing protein-7e-4At5g32440-O.I.H.G.S.X.
0.3641.30.99ZmAffx.151.1.S1_atAI667841--2e-10At1g50140ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.3641.30.99Zm.361.1.A1_atAB060130.1response regulator 8-5e-3At3g16857ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)O.I.H.G.S.X.
0.3538.90.99ZmAffx.1064.1.S1_atAI881965--8e-1At5g44450methyltransferaseO.I.H.G.S.X.
0.3336.00.99Zm.13855.1.S1_atAF439731.1glycine cleavage complex T-protein-7e-47At1g11860aminomethyltransferase, putativeO.I.H.G.S.X.
0.3336.00.99ZmAffx.57.1.A1_atAI665066cupin family protein-1e+1At3g43083LCR33 (Low-molecular-weight cysteine-rich 33)O.I.H.G.S.X.
0.3336.00.99ZmAffx.608.1.A1_atAI715036--2e+0At2g15890MEE14 (maternal effect embryo arrest 14)O.I.H.G.S.X.
0.3336.00.99ZmAffx.550.1.S1_atAI712203--3e+0At5g47410unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.6435.1.A1_atBM078602hypothetical protein LOC100217154-1e-5At2g22370unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.10352.1.A1_atT25228--8e-1At4g19940F-box family proteinO.I.H.G.S.X.
0.3336.01.00Zm.1619.1.A1_atBE012216--1e+1Atcg00760-O.I.H.G.S.X.
0.3233.41.00Zm.127.3.A1_a_atAI677333octopine synthase binding factor1-6e+0At5g04080unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.7689.2.A1_atBM379252--1e+0At5g22180unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.18974.1.A1_atBQ539399hypothetical protein LOC100272472-3e-1At1g17147-O.I.H.G.S.X.
0.3131.60.99Zm.7900.1.A1_atAY108078.1--1e-7At5g51070ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)O.I.H.G.S.X.
0.3131.61.00Zm.327.1.S1_atAB042270.1histidine kinase 1-3e-14At2g01830WOL (WOODEN LEG)O.I.H.G.S.X.
0.3029.80.99Zm.5535.1.S1_atAY108314.1Protein kinase-like-1e-52At3g62220serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.3029.80.99ZmAffx.982.4.S1_atAW787457--3e+0At4g17615CBL1 (CALCINEURIN B-LIKE PROTEIN 1)O.I.H.G.S.X.
0.3029.80.99Zm.13403.1.S1_x_atAF457949.1--2e-2At1g67640lysine and histidine specific transporter, putativeO.I.H.G.S.X.
0.3029.80.99Zm.13551.1.A1_atAY108205.1--2e+0At2g33870ArRABA1h (Arabidopsis Rab GTPase homolog A1h)O.I.H.G.S.X.
0.2928.10.99ZmAffx.1080.1.A1_atAI948353--7e-1At1g22790unknown proteinO.I.H.G.S.X.
0.2928.11.00Zm.18157.1.A1_atCO533028--2e-1At4g20290unknown proteinO.I.H.G.S.X.
0.2928.11.00Zm.1368.1.A1_atCA399867calcineurin B-like protein 3-3e-40At5g55990CBL2 (CALCINEURIN B-LIKE 2)O.I.H.G.S.X.
0.2828.10.99Zm.16783.1.A1_atBG837332hypothetical protein LOC100273909-6e-7At4g33250EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)O.I.H.G.S.X.
0.2724.60.99Zm.9413.1.A1_atCF633220hypothetical protein LOC100216576-1e+0At2g41160ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.2724.60.99Zm.9086.1.A1_atAI649547hypothetical protein LOC100280062-7e-2At1g08160harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.2724.60.99ZmAffx.475.1.A1_atAI677510--2e-1At1g74210glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.2622.70.99ZmAffx.108.1.S1_atAI665554Hypothetical protein LOC100191707-8e-1At5g39640unknown proteinO.I.H.G.S.X.
0.2521.30.99Zm.1410.1.S1_atAY105193.1hypothetical protein LOC100272264-5e-10At5g15840CO (CONSTANS)O.I.H.G.S.X.
0.2521.30.99Zm.16328.1.S1_atCD568892bile acid sodium symporter-3e-3At4g12030bile acid:sodium symporter family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.598.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.090.2GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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