Co-expression analysis

Gene ID	Zm.12184.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g11960: PGRL1B (PGR5-Like B) (HF=6e-10)
Module size	6 genes
NF	0.54
%ile	70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	1.00	Zm.12184.1.A1_at	BM380021	-	-	6e-10	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	1.00	Zm.3851.4.A1_at	CD441077	-	-	1e+0	At5g12470	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	1.00	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	1.00	Zm.17928.1.A1_at	BQ538697	hypothetical protein LOC100217238	-	4e+0	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1608443_at, orthologous to the query gene, Zm.12184.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	1608443_at	At4g11960	hypothetical protein LOC100242824	-	3e-27	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select
0.78	92.6	1616457_at	At4g11960	hypothetical protein LOC100263581	-	2e+0	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	O.I.	H.G.	S.X.	Please select
0.74	91.0	1612337_at	At4g11960	hypothetical protein LOC100252601	-	1e+0	At4g01897	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	88.6	1614561_at	At4g11960	hypothetical protein LOC100253040	-	1e-13	At4g23890	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1618324_s_at	At4g11960	hypothetical protein LOC100248700	-	2e-5	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.64	84.7	1608205_at	At4g11960	similar to Elongation factor Tu, chloroplastic	-	1e-76	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	O.I.	H.G.	S.X.	Please select
0.59	80.6	1607774_at	At4g11960	hypothetical protein LOC100262553	-	7e+0	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.53	75.2	1610385_at	At4g11960	hypothetical protein LOC100253144	-	4e+0	At5g48175	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1619899_at	At4g11960	-	-	1e+0	At1g65740	F-box family protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1621301_at	At4g11960	hypothetical protein LOC100261308	-	4e-22	At1g09340	CRB (CHLOROPLAST RNA BINDING)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1614745_at	At4g11960	hypothetical protein LOC100252143	-	2e-8	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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