| Gene ID | Zm.12184.1.A1_at |
| Gene name | |
| Homology with Arabidopsis | Similar to At4g11960: PGRL1B (PGR5-Like B) (HF=6e-10) |
| Module size | 6 genes |
| NF | 0.54 |
| %ile | 70.4 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.77 | 92.1 | 1.00 | Zm.12184.1.A1_at | BM380021 | - | - | 6e-10 | At4g11960 | PGRL1B (PGR5-Like B) | O.I. | H.G. | S.X. | |
| 0.60 | 77.8 | 1.00 | Zm.7054.1.S1_at | BM331766 | actin-depolymerizing factor 6 | - | 6e-4 | At5g59890 | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) | O.I. | H.G. | S.X. | |
| 0.50 | 65.7 | 1.00 | Zm.15242.1.A1_at | BM340075 | - | - | 1e+1 | At3g16712 | unknown protein | O.I. | H.G. | S.X. | |
| 0.46 | 58.4 | 1.00 | Zm.3851.4.A1_at | CD441077 | - | - | 1e+0 | At5g12470 | unknown protein | O.I. | H.G. | S.X. | |
| 0.42 | 51.3 | 1.00 | ZmAffx.89.1.A1_at | AI665353 | hypothetical protein LOC100277768 | - | 1e+1 | At5g20560 | beta-1,3-glucanase, putative | O.I. | H.G. | S.X. | |
| 0.38 | 44.2 | 1.00 | Zm.17928.1.A1_at | BQ538697 | hypothetical protein LOC100217238 | - | 4e+0 | At5g09660 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2) | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 11.5 | 98.6 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.5 | 98.4 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.0 | 98.4 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.3 | 98.2 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.1 | 98.2 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.0 | 98.2 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.9 | 98.2 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.6 | 98.1 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.3 | 98.0 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.0 | 90.2 | GSM320456 | protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.91 | 98.9 | Os08g0526300 | At4g11960 | - | Conserved hypothetical protein | 3e-12 | At4g11960 | PGRL1B (PGR5-Like B) | O.I. | H.G. | S.X. | |
| 0.77 | 93.1 | Os08g0242700 | At4g11960 | - | Hypothetical protein | 2e+0 | At5g49000 | - | O.I. | H.G. | S.X. | |
| 0.73 | 91.1 | Os07g0108300 | At4g11960 | - | Alanine aminotransferase | 4e-22 | At1g23310 | GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE) | O.I. | H.G. | S.X. | |
| 0.73 | 91.1 | Os12g0188700 | At4g11960 | - | The start codon is not identified. | 1e-4 | At5g46030 | unknown protein | O.I. | H.G. | S.X. | |
| 0.60 | 79.7 | Os03g0773800 | At4g11960 | - | Malate dehydrogenase, glyoxysomal precursor (EC1.1.1.37) (mbNAD-MDH) | 2e-38 | At5g09660 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2) | O.I. | H.G. | S.X. | |
| 0.44 | 58.1 | Os03g0169100 | At4g11960 | - | Ribulose-phosphate 3-epimerase, chloroplastprecursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase)(PPE) (RPE) (R5P3E) | 6e-66 | At5g61410 | RPE | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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