CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.12184.1.A1_at

Gene name
Homology with Arabidopsis Similar to At4g11960: PGRL1B (PGR5-Like B) (HF=6e-10)

Module size 6 genes

NF 0.54

%ile 70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 1.00 Zm.12184.1.A1_at BM380021 - - 6e-10 At4g11960 PGRL1B (PGR5-Like B) O.I. H.G. S.X.
0.60 77.8 1.00 Zm.7054.1.S1_at BM331766 actin-depolymerizing factor 6 - 6e-4 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) O.I. H.G. S.X.
0.50 65.7 1.00 Zm.15242.1.A1_at BM340075 - - 1e+1 At3g16712 unknown protein O.I. H.G. S.X.
0.46 58.4 1.00 Zm.3851.4.A1_at CD441077 - - 1e+0 At5g12470 unknown protein O.I. H.G. S.X.
0.42 51.3 1.00 ZmAffx.89.1.A1_at AI665353 hypothetical protein LOC100277768 - 1e+1 At5g20560 beta-1,3-glucanase, putative O.I. H.G. S.X.
0.38 44.2 1.00 Zm.17928.1.A1_at BQ538697 hypothetical protein LOC100217238 - 4e+0 At5g09660 PMDH2 (peroxisomal NAD-malate dehydrogenase 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.5 98.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1 98.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g11960, orthologous to the query gene, Zm.12184.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At4g11960 826803 PGRL1B (PGR5-Like B) Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). O.I. H.G. S.X.
0.67 81.6 At3g26580 822266 - F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;MOFPBVA O.I. H.G. S.X.
0.57 73.8 At1g19660 838553 wound-responsive family protein F:unknown;P:response to wounding;C:unknown;BOPA O.I. H.G. S.X.
0.57 73.8 At2g20920 816626 unknown protein F:unknown;P:unknown;C:membrane;BPO O.I. H.G. S.X.
0.57 73.8 At4g27990 828912 YGGT family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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