Co-expression analysis

Gene ID	Zm.12177.1.A1_at
Gene name	hypothetical protein LOC100193797
Homology with Arabidopsis	Similar to At2g05752: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.28
%ile	24.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.86	Zm.12177.1.A1_at	BM380114	hypothetical protein LOC100193797	-	3e-1	At2g05752	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.87	Zm.17272.1.S1_at	CK371238	-	-	8e-6	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.87	Zm.8348.1.A1_at	BM073795	Hypothetical protein LOC100193915	-	3e-1	At3g20750	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.88	Zm.8037.1.A1_at	BM073083	-	-	1e+0	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.88	ZmAffx.1022.1.S1_at	AI881590	-	-	3e+0	At5g46800	BOU (A BOUT DE SOUFFLE)	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.89	Zm.17615.1.A1_at	CK347383	protein binding protein	-	2e+0	At2g20620	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.8	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1619670_at, orthologous to the query gene, Zm.12177.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	68.8	1619670_at	At2g05752	-	-	3e-19	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1608135_at	At2g05752	-	-	1e+0	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1622555_at	At2g05752	-	-	3e-11	At3g17970	atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1615204_at	At2g05752	-	-	1e+0	At3g21580	cobalt ion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618733_at	At2g05752	-	-	7e-6	At1g66970	SVL2 (SHV3-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1607040_at	At2g05752	-	-	5e-24	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1614261_at	At2g05752	-	-	1e+0	At4g23885	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1618712_at	At2g05752	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1615924_at	At2g05752	-	-	2e-8	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1620333_at	At2g05752	-	-	1e-10	At3g08020	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.14	14.4	1619050_at	At2g05752	hypothetical protein LOC100249358	-	2e+0	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1607773_at	At2g05752	-	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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